View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_24 (Length: 350)
Name: NF3941_high_24
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 145 - 333
Target Start/End: Complemental strand, 6168649 - 6168461
Alignment:
| Q |
145 |
tacgatcacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccacacatagtcataaccttgaaatgttctaggcattcatttacgt |
244 |
Q |
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| T |
6168649 |
tacgattacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccatacatagtcataaccttgaaatgttctaggcattcatttacgt |
6168550 |
T |
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| Q |
245 |
cttcccaatttggaattctcattcaaaatttcattatcctttcttttttaatgatttaaattttcattaaaatcaaccaaacaccatca |
333 |
Q |
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| T |
6168549 |
cttcccaatttagaattctcattcaaaatttcattatcctttcttttttaatgatttaaattttcattaaaatcaaccaaacaccatca |
6168461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 6169800 - 6169654
Alignment:
| Q |
1 |
cttccaaattttgtaatgttttctatgtttatcctcaaaaaacaaattccnnnnnnnnnnnaatacaaacttttgttttcttacgcatgcatctccaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
6169800 |
cttccaaattttgtaatgttttctatgtttatcctcaaaaaacaaattccattttttttt-aatacaaacttttgtattcttacgcatgcatctccaatt |
6169702 |
T |
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| Q |
101 |
ttattctatagggcttgaactctctatttataaaaacaatcaactacg |
148 |
Q |
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| T |
6169701 |
ttattctatagggcttgaactctctatttataaaaacaatcaaatacg |
6169654 |
T |
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