View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_25 (Length: 347)
Name: NF3941_high_25
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 8004253 - 8004571
Alignment:
| Q |
19 |
gagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagc |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004253 |
gagccaagtgcatatcttgattcagaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagc |
8004352 |
T |
|
| Q |
119 |
atgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaactgtccacaatcattgcttac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004353 |
atgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaactgtccacaatcattgcttac |
8004452 |
T |
|
| Q |
219 |
tgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacacacgttaaaatta |
318 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004453 |
cgggatgaaccttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacacacgttaaaatta |
8004552 |
T |
|
| Q |
319 |
aaaaattatgttctctctg |
337 |
Q |
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||||||||||||||||||| |
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| T |
8004553 |
aaaaattatgttctctctg |
8004571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 7900853 - 7900541
Alignment:
| Q |
19 |
gagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagc |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7900853 |
gagccaagtgcatatcttgattccgaacagcgtattgtagttgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagc |
7900754 |
T |
|
| Q |
119 |
atgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaa-ttaattgtactgcaaactgtccacaatcattgctta |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |
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| T |
7900753 |
atgatttcatcatggcaaattatcttgctgacaaagttatcgttcttgagggtcaaccttcaatttaattttactgcaaactgtccacaatcactgctta |
7900654 |
T |
|
| Q |
218 |
ctgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacacacgttaaaatt |
317 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||| |
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| T |
7900653 |
ctgggatgaaccttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgtccctttttaaaaatttagggtatcatgcatgttaaaatt |
7900554 |
T |
|
| Q |
318 |
aaaaaattatgtt |
330 |
Q |
| |
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|||||||||||| |
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| T |
7900553 |
taaaaattatgtt |
7900541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 51518573 - 51518882
Alignment:
| Q |
19 |
gagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagc |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51518573 |
gagccaagtgcatatcttgattccgaacagcgtattgttgctgcaaaagtcatcaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagc |
51518672 |
T |
|
| Q |
119 |
atgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaactgtccacaatcattgcttac |
218 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| || |
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| T |
51518673 |
atgatttcatcatggcaacttatcttgctgacagagttattgtttatgagggtcaaccttcaattgactgtactgcaaattgtccacaatcattgctgac |
51518772 |
T |
|
| Q |
219 |
tgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacacacgttaaaatta |
318 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||||| | ||||||||| |
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| T |
51518773 |
cgggatgaaccttttcttatctgtaagtgtcgttgtttttcaatggtttcattaattcattccgttttaaaaatttagggtatcacgaaagttaaaattt |
51518872 |
T |
|
| Q |
319 |
aaaaattatg |
328 |
Q |
| |
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||||| |||| |
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|
| T |
51518873 |
aaaaagtatg |
51518882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 1300599 - 1300350
Alignment:
| Q |
19 |
gagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagc |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
1300599 |
gagccaagtgcatatcttgattccgaacagcgtattattgctgcaaaagttatcaagaggtttattcttcatgcaaagaaaacagcctttgtggttgagc |
1300500 |
T |
|
| Q |
119 |
atgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaactgtccacaatcattgcttac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||| | |||||||||| |||| || |
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| T |
1300499 |
atgatttcatcatggcaacttatcttgctgacagagttattgtttatgagggtcaaccttcaattgactgtactgcaaattctccacaatcactgctgac |
1300400 |
T |
|
| Q |
219 |
tgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttc |
268 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
1300399 |
tgggatgaaccttttcttatcagtaagtgtcattgtttttcaatggtttc |
1300350 |
T |
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