View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_32 (Length: 296)
Name: NF3941_high_32
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 47944467 - 47944756
Alignment:
| Q |
13 |
atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcataaaacacggtggaagttctaatccagctttatcacaaagatca |
112 |
Q |
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| T |
47944467 |
atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcataaaacacggtggaagttctaatccagctttatcacaaagatca |
47944566 |
T |
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| Q |
113 |
attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaccatcg------ttaccattgaattcagaattttcca |
206 |
Q |
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| T |
47944567 |
attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaacatcgttaaaattaccattaaattcagaattttcca |
47944666 |
T |
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| Q |
207 |
gcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccataga |
296 |
Q |
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| T |
47944667 |
gcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccataga |
47944756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 6134237 - 6133944
Alignment:
| Q |
13 |
atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcataaaacacggtggaagttctaatccagctttatcacaaagatca |
112 |
Q |
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| T |
6134237 |
atcatcaccaggaagatactcaaatattaagagcttaagttccattgggaggctcataaaacatggtggaagattcaatccagctttatcacaaagatcc |
6134138 |
T |
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| Q |
113 |
attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaccatcgttaccattga------------attcagaat |
200 |
Q |
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| T |
6134137 |
attaaaagtggcaatgcaagcctatcattcactatcttccacaattcaaaaacctcattttcatcatcattaacattaaaactagcaatagattcaaaat |
6134038 |
T |
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| Q |
201 |
tttccagcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccata |
294 |
Q |
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| T |
6134037 |
ttgatagcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtacatttgacccaacatcatcatacaatgaaccata |
6133944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 20600420 - 20600124
Alignment:
| Q |
13 |
atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcataaaacacggtggaagttctaatccagctttatcacaaagatca |
112 |
Q |
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||||||||| ||||||||||||||||| | |||||||| ||||| || || | ||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
20600420 |
atcatcaccaggaagatactcaaatattacgagcttaagttccattgggaggctcataaaacaaggtggaagaatcaatccagctttatcacaaagatca |
20600321 |
T |
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| Q |
113 |
attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaa------ctttatctccaccatcgtt------accattgaattcagaat |
200 |
Q |
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||||| ||||| |||||||||| ||| |||||||||||||||||||| |||| ||||||| ||| || | || | |||| ||||||||| |
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| T |
20600320 |
attaaaagtggaaatgcaagcctatcgttcactatcttccacaattccaaaacttcatctttatcaccatcaacattaacacaagcattagattcagaat |
20600221 |
T |
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| Q |
201 |
tt---tccagcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccata |
294 |
Q |
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| T |
20600220 |
ttgacatcagcagaaactctaaaggcttggcaaatctacatttatctaaataaaccatatgtacacttgacccaacatcatcatacaatgaaccata |
20600124 |
T |
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