View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_39 (Length: 280)
Name: NF3941_high_39
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 496768 - 497010
Alignment:
| Q |
18 |
atgtaagttttttacttttggattaattatagtataagaacaatcaattttttactaagataacttatatataaaagctcttacagactaaagagataaa |
117 |
Q |
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| T |
496768 |
atgtaagttttttacttttggattaactatagtataagaacaatcaattttttactaagataacttatatataaaagctcttacagactaaagagataaa |
496867 |
T |
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| Q |
118 |
tataaaatctggtttgaattattatgataaatacacacatatttgatgttgtgtttttgtatctttacatcttaaatctagaacatgtatgatttggata |
217 |
Q |
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| T |
496868 |
tataaaatctggtttgaattattatgataaatacacacatatttgatgttgtgtttttgtatc-ttacatcttaaatctagaacatgtatgatttggata |
496966 |
T |
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| Q |
218 |
ttttccaatcggtttacactactttgtggtaaaacacaacttta |
261 |
Q |
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| T |
496967 |
ttttccaatcggtttacactactttgtggtaaaacataacttta |
497010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 500655 - 500707
Alignment:
| Q |
33 |
ttttggattaattatagtataagaacaatcaa--ttttttactaagataactt |
83 |
Q |
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|||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
500655 |
ttttggattagctaaagtataagaacaatcaattttttttactaagataactt |
500707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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