View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3941_high_40 (Length: 276)
Name: NF3941_high_40
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_40 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 38995430 - 38995173
Alignment:
| Q |
1 |
gagttgataattcaccgtccataatcttatacattgataaagttgggagagcaatgaaatgttatctgttgaaggtaaggataagcaagtgcatcaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38995430 |
gagttgataattcaccgtccataatctcatacattgataaagttgggagagcaatgaaatgttatctgttgaaggtaaggataagcaagtgcatcaaatt |
38995331 |
T |
|
| Q |
101 |
taagtattaaataatatagtagtatgcaaggtatatgtttagaggaagcaaatttgttatgtgtcaaagttaaaacgtaagagataaaagaaattaatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38995330 |
taagtattaaataatatagtagtatgcaaggtatatgtttagaggaagcaaatttgttatgtgtcaaagttaaaacgtaagagataaaagaaattaatta |
38995231 |
T |
|
| Q |
201 |
tgaaagactcatgttcattgaaaattagaggtgtaaatcaaatgcagaggtatgtctt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38995230 |
tgaaagactcatgttcattgaaaattagaggtgtaaatcaaatgcagaggtatgtctt |
38995173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University