View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3941_high_41 (Length: 265)
Name: NF3941_high_41
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 48695276 - 48695019
Alignment:
| Q |
1 |
ttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695276 |
ttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgc |
48695177 |
T |
|
| Q |
101 |
tttgctctcatagtttcctctattaaaaagatgagggaaacataataagctttattgctgcaaaaactagctaattagataaagggagatcttaatgatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
48695176 |
tttgctctcatagtttcctctattaaaaagatgagggaaacataataagctttattgctacaaaaactaattaattagataaagggagattttaatgatt |
48695077 |
T |
|
| Q |
201 |
gaatcaaacaatcaacctgtaatgtgaatggttttattcagttctgtttcctttgctt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695076 |
gaatcaaacaatcaacctgtaatgtgaatggttttattcagttctgtttcctttgctt |
48695019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 3455127 - 3455251
Alignment:
| Q |
1 |
ttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgc |
100 |
Q |
| |
|
|||||| |||||||||||||| || | ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| || ||| |
|
|
| T |
3455127 |
ttgctctttatcaagttttgttgtcgtaagaatttcagccatgctaacaacaccagaaagcggtgatcttatctcatgagacattgttgccaacatttgt |
3455226 |
T |
|
| Q |
101 |
tttgctctcatagtttcctctatta |
125 |
Q |
| |
|
||||||||||| || |||||||||| |
|
|
| T |
3455227 |
tttgctctcattgtctcctctatta |
3455251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 3479502 - 3479616
Alignment:
| Q |
11 |
tcaagttttgtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgctctca |
110 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| || ||| |||||||||| |
|
|
| T |
3479502 |
tcaagttttgttgtagtaagaattttggccatgctaacaacatcagaaagtggtgatcttatctcatgagacattgttgccaacatttgttttgctctca |
3479601 |
T |
|
| Q |
111 |
tagtttcctctatta |
125 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
3479602 |
ttgtctcctctatta |
3479616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 3455350 - 3455394
Alignment:
| Q |
214 |
aacctgtaatgtgaatggttttattcagttctgtttcctttgctt |
258 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3455350 |
aacctgtaatgtgaatggttttattaagttctgtttcctttgctt |
3455394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 3479715 - 3479759
Alignment:
| Q |
214 |
aacctgtaatgtgaatggttttattcagttctgtttcctttgctt |
258 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3479715 |
aacctgtaatgtgaatggttttattaagttctgtttcctttgctt |
3479759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University