View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_42 (Length: 261)
Name: NF3941_high_42
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 13501276 - 13501462
Alignment:
| Q |
6 |
cggaggttaattgtagccgtcaaactaagttatccgacccgtttatgatcagttctaatgagcttcaaactttacgaggtcgggccaaaatccttattaa |
105 |
Q |
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| T |
13501276 |
cggaagttaattgtagccgtcaaactaaattatccgacccgtttatgatcagtcttaacaagcttcaaactttatgaggtcgggccaaaatccttataaa |
13501375 |
T |
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| Q |
106 |
aagacaagttat-nnnnnnnnnttatttgagctcggtcctatacaggtcacgaactaaacagattggcccgtataaaaaataacttt |
191 |
Q |
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| T |
13501376 |
aagacaagttataaaaaaaaaattatttgagctcagtcctatacgggtcacgaactaaacagaccggcccctataaaaaataacttt |
13501462 |
T |
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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 13501564 - 13501607
Alignment:
| Q |
213 |
aaactaaaatgacgaggaaatcaactttagataaattacctatg |
256 |
Q |
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| T |
13501564 |
aaactaaaacgacgaggaaatcaactttagataaattacctatg |
13501607 |
T |
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