View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3941_high_48 (Length: 240)
Name: NF3941_high_48
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_48 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 40662769 - 40662551
Alignment:
| Q |
1 |
ttcaaagaagcatctttactggaaagtaggtaacaaatcccattttgatgatgatcaacattccaagcaataagagattgagtgagccaataagctcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40662769 |
ttcaaagaagcatctttactggaaagtaggtaacaaatcccattttgatgatgatcaacattccaagcaataagcgattgagtgagccaataagctcttg |
40662670 |
T |
|
| Q |
101 |
agtataataacaaattatcctgcatctgggccatcataattaaaacaaaagttagaaatcccaattnnnnnnnggatttttattcaggaatgaaagaaac |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
40662669 |
agtacaataacaaattatcctgcatctgggccatcataattaaaacaaaagttagaaatcccaattaaaaaaaggatttgtattcaggaatgaaagaaac |
40662570 |
T |
|
| Q |
201 |
aatgataaatgcaggggca |
219 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
40662569 |
aatgataaatgcagaggca |
40662551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University