View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_49 (Length: 238)
Name: NF3941_high_49
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_49 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 44627628 - 44627413
Alignment:
| Q |
18 |
tcttggttatcaaatattctttactgcatgataccnnnnnnnnnnnnnnnntattctttactgcacatatatgctaagtatactagcgtatcaagcggta |
117 |
Q |
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| T |
44627628 |
tcttggttatcaaatattctttactgcatgataccaaaaataaataaaaaatattctttactgcacatatatgctaagtatactagcgtatcaagcggta |
44627529 |
T |
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| Q |
118 |
agagtaacttaattaatttatttacttgaccnnnnnnnncttaataattaataatattggagaaagtgttttttcttaaaggattatagaaagtggtttt |
217 |
Q |
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| T |
44627528 |
agagtaacttaattaatt-----acttgaccaaaaaaaacttaataattaatcatattggagaaagtgttttttcttaaagaattagagaaagtggtttt |
44627434 |
T |
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| Q |
218 |
atttttcagggaatcaatcac |
238 |
Q |
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| T |
44627433 |
atttttcagggaatcaatcac |
44627413 |
T |
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