View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3941_high_6 (Length: 487)
Name: NF3941_high_6
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 14 - 478
Target Start/End: Complemental strand, 48695733 - 48695269
Alignment:
| Q |
14 |
ccaacttcataactcctacacataatgcagattttgggaggtaggaatcagtctatataatcatctagtttatgtatcactgaggcatgtttgaataaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
48695733 |
ccaacttcataactcctacacataatgcagattttgggaggtaggaatcagtgtatataatcatctagtttatgtatcattgaggcatgtttgaatatac |
48695634 |
T |
|
| Q |
114 |
ataaaattaagcgcgtatagattagacacttagcacataagtgattatgtatacgatattcctataacaaagtataatagaaacttaaactgttgtcatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695633 |
ataaaattaagcgcgtatagattagacacttagcacataagtgattatgtatacgatattcctataacaaagtataatagaaacttaaactgttgtcatt |
48695534 |
T |
|
| Q |
214 |
taaactataagctgctgtcataagctatcttagagaccttacaggaatatgttgaaaacaacttatgaacatctgatacgctgaaaacaacttataccaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
48695533 |
taaactataagctgctgtcataagctatcttagagaccttacaggaatatgttgaaaacaacttgtgaacatccgatacgctgaaaacaacttataccaa |
48695434 |
T |
|
| Q |
314 |
ttgatacgtttaaataattcaatctaaacaggtcctaatatggattggaaacaaggacagatttccaacctgattcaaccttggaaagatcaagtatgtc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695433 |
ttgatacgtttaaataattcaatctaaacaggtcctaatatggattggaaacaaggacagatttccaacctgattcaaccttggaaagatcaagtatgtc |
48695334 |
T |
|
| Q |
414 |
atttatgagttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctgtgctcct |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48695333 |
atttatgagttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctttgctcct |
48695269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 47319346 - 47319306
Alignment:
| Q |
214 |
taaactataagctgctgtcataagctatcttagagacctta |
254 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
47319346 |
taaactataagctgttgtcataatctatcttagagagctta |
47319306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 372 - 476
Target Start/End: Original strand, 3455028 - 3455132
Alignment:
| Q |
372 |
agatttccaacctgattcaaccttggaaagatcaagtatgtcatttatgagttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctg |
471 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
3455028 |
agatttctaacctgactcgaccttggaaagatcaagtatatcatttataagttgaagaaccaaatctcctgaagataacatgacatccaaaagctgtctt |
3455127 |
T |
|
| Q |
472 |
tgctc |
476 |
Q |
| |
|
||||| |
|
|
| T |
3455128 |
tgctc |
3455132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 12975298 - 12975407
Alignment:
| Q |
170 |
tattcctataacaaagtataatagaaacttaaactgttgtcatttaaactataagctgctgtcataagctatcttagagaccttacaggaatatgttgaa |
269 |
Q |
| |
|
|||||||||||||||| |||| | ||| | ||| |||| |||| ||| |||||||||| |||||||||||||| |||| |||| |||||| |||||| |
|
|
| T |
12975298 |
tattcctataacaaagaataaaataaaatcaaattgttttcatataagctataagctgtgttcataagctatcttggagagctta-tggaataagttgaa |
12975396 |
T |
|
| Q |
270 |
aacaacttatg |
280 |
Q |
| |
|
||||||||||| |
|
|
| T |
12975397 |
aacaacttatg |
12975407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 34035929 - 34035982
Alignment:
| Q |
231 |
tcataagctatcttagagaccttacaggaatatgttgaaaacaacttatgaaca |
284 |
Q |
| |
|
||||||||||||||||||| ||| | |||| ||||||||||||||||||||| |
|
|
| T |
34035929 |
tcataagctatcttagagaacttgcgaaaataagttgaaaacaacttatgaaca |
34035982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University