View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_9 (Length: 456)
Name: NF3941_high_9
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 6170538 - 6170092
Alignment:
| Q |
1 |
agctttggaaattgataatagagaagctacaaattgtaggacacaacaaatccactatcaaataacaatacaaacataagctaataaaataggaacacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6170538 |
agctttggaaattgataatagagaagctacaaattgtaggacacaacaaatccactatcaaataacaatacaaacataggctaataaaataggaacacat |
6170439 |
T |
|
| Q |
101 |
taaaaaatatccacatcaattttttatcaatggaatcaattttatgtcatcctggaaccaattctatatctcataaattaattttaatctttgatcctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170438 |
taaaaaatatccacatcaattttttatcaatggaatcaattttatgtcatcctggaaccaattctatatctcataaattaattttaatctttgatcctat |
6170339 |
T |
|
| Q |
201 |
tcgaagaaacaaatcaattaagatcaatttcattacaaatgaagnnnnnnngataattactccctttgtccttgattataaacacctatcatgtttttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170338 |
tcgaagaaacaaatcaattaagatcaatttcattacaaatgaagaaaaaaagataattactccctttgtccttgattataaacacctatcatgtttttat |
6170239 |
T |
|
| Q |
301 |
tttctattcaaatatactccctaccaaattaattataaacacagacaatttgataaattgtttcaattagcaatgttattcaaaatgattaagttcgaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6170238 |
tttctattcaaatatactccctaccaaattaattataaacacagacaatttgataaattgtttcaattagcaatgtta-tcaaaatgattaagttcgaag |
6170140 |
T |
|
| Q |
401 |
tggtaaccgccaaaagatatcgatctttgagattgttgttgatgatgt |
448 |
Q |
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| T |
6170139 |
tggtaactgccaaaagatatcgatctttgagattgttgttggtgatgt |
6170092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 6187142 - 6187038
Alignment:
| Q |
345 |
acaatttgataaattgtttcaa-ttagcaatgttattcaaaatgattaagttcgaagtggtaaccgccaaaagatatcgatctttgagattgttgttgat |
443 |
Q |
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||||||||||||||||| |||| ||||||||| ||||||| ||||| |||||||||||| || | |||| |||| || ||||| |||||||||| | |
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| T |
6187142 |
acaatttgataaattgtctcaagttagcaatgacattcaaattgatttggttcgaagtggtcgtcggctaaaggtatctatatttgatattgttgttggt |
6187043 |
T |
|
| Q |
444 |
gatgt |
448 |
Q |
| |
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||||| |
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| T |
6187042 |
gatgt |
6187038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 47336542 - 47336509
Alignment:
| Q |
5 |
ttggaaattgataatagagaagctacaaattgta |
38 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
47336542 |
ttggaaattgataatagagaagctacaaattgta |
47336509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 4244086 - 4243982
Alignment:
| Q |
345 |
acaatttgataaattgtttcaa-ttagcaatgttattcaaaatgattaagttcgaagtggtaaccgccaaaagatatcgatctttgagattgttgttgat |
443 |
Q |
| |
|
||||||||||||||||| |||| | ||||||| |||||||| ||||| ||||| ||||| ||| |||||| |||| || || || |||||||||| | |
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| T |
4244086 |
acaatttgataaattgtctcaagtgagcaatgatattcaaattgatttggttcgtagtgggcgccgacaaaaggtatcaatattcgatattgttgttggt |
4243987 |
T |
|
| Q |
444 |
gatgt |
448 |
Q |
| |
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||||| |
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|
| T |
4243986 |
gatgt |
4243982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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