View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_14 (Length: 418)
Name: NF3941_low_14
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 5 - 403
Target Start/End: Original strand, 17693240 - 17693638
Alignment:
| Q |
5 |
atggacatcatcaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
104 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17693240 |
atggacatcaccaaaccataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattataaccttctcgtgttgcaaat |
17693339 |
T |
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| Q |
105 |
agatggagattcaccttcttcgatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatc |
204 |
Q |
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| T |
17693340 |
agatggagattcaccttcttcgatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatc |
17693439 |
T |
|
| Q |
205 |
tattatgtaccttgaggaaaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaacttagaagatgcccaggttggcaaattagaa |
304 |
Q |
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| T |
17693440 |
tattatgtaccttgaggaaaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaa |
17693539 |
T |
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| Q |
305 |
gaaaaatgtgtcatcacttgtggcaacttcagaccctttttcctcaattctcttgnnnnnnnnaaccacttgtgttatgccttgtcttcaagttccaac |
403 |
Q |
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| T |
17693540 |
gaaaaatgtgtcatcacttgtggcaacttcagaccctttttcctcaattctcttgttttttttaaccacttttgttatgccttgtcttcaagttccaac |
17693638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 17613507 - 17613861
Alignment:
| Q |
5 |
atggacatcatcaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
104 |
Q |
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|||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17613507 |
atgggcatcaccaaagcataggtggttgcaccctatggtgcttgtgaagagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
17613606 |
T |
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| Q |
105 |
agatggagattcaccttcttcgatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatc |
204 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||| |||||||||||| |||||||| |
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| T |
17613607 |
aggtggagattcaccttcttcgatgatggtgtctttacgccttaatttcagtgctaacggacatatatcacgcagaacctagtgtacagggattgatatc |
17613706 |
T |
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| Q |
205 |
tat-tatgtaccttgaggaaaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaacttagaagatgcccaggttggcaaattaga |
303 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
17613707 |
tatgtatgtaccttgaggaaagattcacttgttgtgatatatattttgaagccatgttgaatgtttgtaaattagaagatgcccaggttggccaattaga |
17613806 |
T |
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| Q |
304 |
agaaaaatgtgtcatcacttgtggcaacttcagaccc-tttttcctcaattctct |
357 |
Q |
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| T |
17613807 |
agaaaaatgtgtcatcacttgtggcaacttctgacccttttttcctcaattctct |
17613861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 17671088 - 17671324
Alignment:
| Q |
5 |
atggacatcatcaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
104 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17671088 |
atggacatcaccaaagcataggtggttgcaccctatggtgcttgtgaagagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
17671187 |
T |
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| Q |
105 |
agatggagattcaccttcttcgatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatc |
204 |
Q |
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| T |
17671188 |
agatggagattcaccttcttcgatgatggtgtcttttcgccttagtttcagtgctaacggacatctatcatgcagaacctagtgtacagggattgatatc |
17671287 |
T |
|
| Q |
205 |
tat-tatgtac--cttgaggaaaggttcacttgttgt |
238 |
Q |
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||| ||||||| ||||| ||| |||||||||||||| |
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| T |
17671288 |
tatgtatgtaccacttgatgaatggttcacttgttgt |
17671324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 17626692 - 17626844
Alignment:
| Q |
5 |
atggacatcatcaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
104 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17626692 |
atggacatcaccaaagcataggtggttgcaccctatggtgcttgtgaagagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
17626791 |
T |
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| Q |
105 |
agatggagattcaccttcttcgatgatggtgtctttatgccttaatttcagtg |
157 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
17626792 |
agatggagattcaccttcttcgatgatggtgtcttttcgccttagtttcagtg |
17626844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 264 - 357
Target Start/End: Original strand, 17671327 - 17671421
Alignment:
| Q |
264 |
atgtttgtaacttagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcacttgtggcaacttcagaccc-tttttcctcaattctct |
357 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
17671327 |
atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcacttgtggcaacttctgacccttttttcctcaattctct |
17671421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 264 - 357
Target Start/End: Original strand, 17657819 - 17657913
Alignment:
| Q |
264 |
atgtttgtaacttagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcacttgtggcaacttcagaccct-ttttcctcaattctct |
357 |
Q |
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| T |
17657819 |
atgtttgtaaattagaagatgctcaggtttgcaaattagaagaaaaatgtgtcatcacttgtggcaacttctgaccctattttcctcaattctct |
17657913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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