View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_16 (Length: 407)
Name: NF3941_low_16
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_16 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] scaffold1049 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Original strand, 13484 - 13877
Alignment:
| Q |
14 |
cataggcaaacttatttatttaactactactcgtcctgatatatcctttgttattcaacaattaagccaatttgtttcgaaacctcagcaagttcactat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13484 |
cataggcaaacttatttatttaactactactcgtcctgatatatcctttgctgttcaacaattaagccaatttgtttcgaaacctcagcaagttcactat |
13583 |
T |
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| Q |
114 |
caggctgctattagagttttacaatatctgaaaactgcccctaccaaaggattattctactcagcaacttctaatttgaaactttctggttttgcagatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13584 |
caggctgctattagagttttacaatatctgaaaactgcccctgccaaaggattattctactcagcaacttctaatttgaaactttctagttttgcagatt |
13683 |
T |
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| Q |
214 |
ctgattgggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagcagtcaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13684 |
ctgattgggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagcagtcgat |
13783 |
T |
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| Q |
314 |
cgtctccaaatcaagctcagaagctgaatatcgtgcattagcaagccttacatgtgaactgcaatggctaatgtacctctttaaagatctgcac |
407 |
Q |
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| T |
13784 |
cgtctccaaatcaagctcagaagctgaatatcgcgcattagcaagccttacatgtgaactgcaatggctaatgtacctctttaaagatctgcac |
13877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1049 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1049
Description:
Target: scaffold1049; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 465 - 413
Alignment:
| Q |
255 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
307 |
Q |
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| T |
465 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 19742956 - 19743060
Alignment:
| Q |
203 |
ttttgcagattctgattgggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcatttcatggaaatccaag |
302 |
Q |
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|||||| |||||||||||||||| |||||| ||| || || ||| | || || | ||||||||| ||||| |||||| | ||||| ||||| |||||| |
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| T |
19742956 |
ttttgctgattctgattgggcaaggtgtcctgaaactagaaagtctattacaggattttgtgtgttacttggttcttctttaatttcttggaagtccaag |
19743055 |
T |
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| Q |
303 |
aagca |
307 |
Q |
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| T |
19743056 |
aagca |
19743060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 26083349 - 26083297
Alignment:
| Q |
255 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
307 |
Q |
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| T |
26083349 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
26083297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 26107136 - 26107084
Alignment:
| Q |
255 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
307 |
Q |
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| T |
26107136 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
26107084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 4502303 - 4502355
Alignment:
| Q |
255 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
307 |
Q |
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| T |
4502303 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
4502355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 15825855 - 15825907
Alignment:
| Q |
255 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
307 |
Q |
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| T |
15825855 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
15825907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 548938 - 548886
Alignment:
| Q |
255 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
307 |
Q |
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| T |
548938 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
548886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 30279350 - 30279298
Alignment:
| Q |
255 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
307 |
Q |
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| T |
30279350 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
30279298 |
T |
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