View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3941_low_17 (Length: 407)
Name: NF3941_low_17
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 154 - 396
Target Start/End: Original strand, 27814398 - 27814640
Alignment:
| Q |
154 |
ttcgatttcatttatcttcaagctcacccttccttcttcttcccactacactattcctacaaagctctgctttttctcatatgggtaatcttattatcca |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27814398 |
ttcgatttcatttatcttcaagctcacccttccttcttcttcccactacactattcctacaaagctctgttttttctcatatgggtaatcttattatcca |
27814497 |
T |
|
| Q |
254 |
tcaccttgatttggcaacttgatatcataaaatgaagttttattcttcaaagagaagtgtaaatgtgttccagaattgcaaaaccatatcaataagatga |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| || |
|
|
| T |
27814498 |
tcaccttgatttggcaacttgatatcataaaatgaaattttattcttcaaagaaaagtgtaaatatgttccaaaattgcaaaaccatatcaataagaaga |
27814597 |
T |
|
| Q |
354 |
atatgaggttgaacccccaacaagatctactggctggctctgt |
396 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27814598 |
atatgagtttgaacccccaacaagatctactggctggttctgt |
27814640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 27814294 - 27814379
Alignment:
| Q |
17 |
aatgagcttgcacttggtggttcgctgattgatatcataaaatgatgcttcac-ggtcctatctaccacgtgctttctcttgtgct |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
27814294 |
aatgagctgacacttggtggttcgctgattgatatcataaaatgatgtgtcactgttcctatctaccacgtgctttctcttgtgct |
27814379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 210 - 396
Target Start/End: Complemental strand, 20196218 - 20196031
Alignment:
| Q |
210 |
ctacaaagctctgctttttctcatatgggtaatcttattatccatcaccttgatttggcaacttgatatcataaaatgaagttttattcttcaaagagaa |
309 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20196218 |
ctacaaagctctcttttttctcatatgggtaatcttattatccttcaccttgatttggcaacttgatatcacaaaatgaagttttattcttcaaagagaa |
20196119 |
T |
|
| Q |
310 |
gtgtaaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaacc-cccaacaagatctactggctggctctgt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
20196118 |
gtgtaaatgtgttccagaattgcaaaaccatatcaataagaagaatatgaggttgaacctcccaacaaactctaggggctggctctgt |
20196031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 36379213 - 36379322
Alignment:
| Q |
288 |
aagttttattcttcaaagagaagtgtaaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaac-ccccaacaagatctactgg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
36379213 |
aagttttattcttcaaagagaagtgtaaatgtgttccagaattgcaaaaccatattaataagaagaatatgaggttgaacgtaccaacaaactctactga |
36379312 |
T |
|
| Q |
387 |
ctggctctgt |
396 |
Q |
| |
|
|||||||||| |
|
|
| T |
36379313 |
ctggctctgt |
36379322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 23889435 - 23889352
Alignment:
| Q |
314 |
aaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaac-ccccaacaagatctactggctggctctgt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
23889435 |
aaatgtgttccagaattgcaaaaccatattaataagaagaatatgaggttgaacgtaccaacaaactctactggctggctctgt |
23889352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 23901648 - 23901565
Alignment:
| Q |
314 |
aaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaac-ccccaacaagatctactggctggctctgt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
23901648 |
aaatgtgttccagaattgcaaaaccatattaataagaagaatatgaggttgaacgtaccaacaaactctactggctggctctgt |
23901565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 38058433 - 38058398
Alignment:
| Q |
224 |
tttttctcatatgggtaatcttattatccatcacct |
259 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38058433 |
tttttctcatatgggtaatcttatcatccatcacct |
38058398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 39204996 - 39205074
Alignment:
| Q |
288 |
aagttttattcttcaaagagaagtgtaaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaa |
366 |
Q |
| |
|
|||||||||||||| |||| || |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
39204996 |
aagttttattcttcgaagacaaatgtaaatgtgttccagaactgcaaaaccatattaataagaagaatatgaggttgaa |
39205074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 35942708 - 35942658
Alignment:
| Q |
210 |
ctacaaagctct-gctttttctcatatgggtaatcttattatccatcacct |
259 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35942708 |
ctacaaagctctcgttttttctcatatgggtaatcttatcatccatcacct |
35942658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University