View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_18 (Length: 407)
Name: NF3941_low_18
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 42 - 393
Target Start/End: Original strand, 28675509 - 28675867
Alignment:
| Q |
42 |
tttgaagcagaagggtcattactttgatgtaattaattgtgtcgcgtattcgcagga--ctcaactccttgctattggagcaaatgataataaagtgaaa |
139 |
Q |
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| T |
28675509 |
tttgaagcagcagggtcattactttgatgt---taattgtgtcgcatattcgcaggattctcaactccttgctactggagcagatgataataaagtgaag |
28675605 |
T |
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| Q |
140 |
gtattcactctcacattgtactttatgctaattaatatttggtttgaaattcttagataaaatgaattgtgcaaacactgaattgatcatgatgatataa |
239 |
Q |
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| T |
28675606 |
gtattcactctcacattgtactttttgctaattaatatttggtttgaatttctaagataaaatgaactgtgcaaacactgaattgatcatgatgatataa |
28675705 |
T |
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| Q |
240 |
tgtcac-----catgttaattgtgtaataatcaaatatttgtatatgtgtatagtgaaaagtgaaacatagataaaatattgtacctagtatgagtaagg |
334 |
Q |
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| T |
28675706 |
tgtcaccagaacatgtttattgtgtaatagtcaaatatttgtacatgtgtatagtgaaaagtgaaacatagataaaatgttggacctagtataagtaagg |
28675805 |
T |
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| Q |
335 |
taac---actgtcaaaaagagccaaggagaagcgttttcttatcaaaacatgttgacggaag |
393 |
Q |
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|||| |||||||||||||||| ||||| || |||||||||||||||||||||||| |||| |
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| T |
28675806 |
taacagaactgtcaaaaagagccgaggaggagtgttttcttatcaaaacatgttgacagaag |
28675867 |
T |
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