View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3941_low_19 (Length: 405)

Name: NF3941_low_19
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3941_low_19
NF3941_low_19
[»] chr2 (29 HSPs)
chr2 (1-219)||(26206000-26206217)
chr2 (103-219)||(4513706-4513822)
chr2 (88-179)||(26205045-26205136)
chr2 (221-279)||(26205825-26205883)
chr2 (111-212)||(8538584-8538685)
chr2 (84-219)||(28108865-28109000)
chr2 (101-179)||(41296447-41296525)
chr2 (154-219)||(4830628-4830693)
chr2 (98-177)||(2305582-2305661)
chr2 (64-142)||(37982699-37982777)
chr2 (156-219)||(40174718-40174780)
chr2 (101-179)||(4512151-4512229)
chr2 (156-225)||(23178829-23178898)
chr2 (156-225)||(23590086-23590155)
chr2 (156-219)||(6707026-6707089)
chr2 (111-201)||(36422692-36422782)
chr2 (106-179)||(8537062-8537135)
chr2 (126-173)||(3254926-3254973)
chr2 (101-177)||(2306656-2306732)
chr2 (101-173)||(4630083-4630155)
chr2 (101-177)||(33836814-33836890)
chr2 (101-173)||(33837754-33837826)
chr2 (156-219)||(7038293-7038356)
chr2 (126-177)||(41312570-41312621)
chr2 (101-179)||(14714537-14714615)
chr2 (149-219)||(14716148-14716218)
chr2 (101-137)||(41295150-41295186)
chr2 (101-173)||(41313266-41313338)
chr2 (169-225)||(42596673-42596729)
[»] chr8 (31 HSPs)
chr8 (82-219)||(13514818-13514956)
chr8 (82-219)||(13604351-13604489)
chr8 (87-219)||(44101979-44102112)
chr8 (64-179)||(21670072-21670187)
chr8 (104-219)||(39323835-39323950)
chr8 (149-219)||(16362512-16362582)
chr8 (87-179)||(44103289-44103381)
chr8 (82-179)||(13513445-13513543)
chr8 (82-179)||(13602978-13603076)
chr8 (111-219)||(8397211-8397319)
chr8 (87-215)||(40251313-40251441)
chr8 (104-179)||(21961871-21961946)
chr8 (156-219)||(34616234-34616297)
chr8 (156-219)||(37274987-37275050)
chr8 (111-179)||(13363571-13363639)
chr8 (101-180)||(10053736-10053815)
chr8 (237-279)||(13514610-13514652)
chr8 (237-279)||(13604143-13604185)
chr8 (101-139)||(39325867-39325905)
chr8 (113-182)||(38664426-38664495)
chr8 (156-201)||(44607287-44607332)
chr8 (159-219)||(7770100-7770160)
chr8 (159-219)||(7777777-7777837)
chr8 (156-219)||(36939986-36940049)
chr8 (101-179)||(10052149-10052227)
chr8 (101-139)||(13360398-13360436)
chr8 (159-219)||(7795869-7795930)
chr8 (159-219)||(7815146-7815207)
chr8 (227-279)||(44102272-44102329)
chr8 (157-189)||(24068431-24068463)
chr8 (171-219)||(35945390-35945438)
[»] chr4 (30 HSPs)
chr4 (64-193)||(36604448-36604577)
chr4 (64-193)||(18358351-18358481)
chr4 (101-213)||(2292195-2292307)
chr4 (68-219)||(38371758-38371909)
chr4 (64-179)||(36604834-36604950)
chr4 (101-201)||(96652-96752)
chr4 (101-179)||(2293518-2293596)
chr4 (106-180)||(53150452-53150526)
chr4 (101-177)||(29833417-29833493)
chr4 (101-180)||(29686301-29686380)
chr4 (239-291)||(2292492-2292544)
chr4 (156-211)||(6139097-6139152)
chr4 (101-173)||(2310781-2310853)
chr4 (98-162)||(19049882-19049946)
chr4 (111-179)||(53151567-53151634)
chr4 (156-215)||(43895574-43895633)
chr4 (130-179)||(29687971-29688020)
chr4 (101-177)||(526714-526790)
chr4 (159-219)||(46795979-46796039)
chr4 (101-173)||(52880859-52880931)
chr4 (156-219)||(28103439-28103502)
chr4 (160-219)||(43418137-43418196)
chr4 (106-165)||(44690862-44690921)
chr4 (161-219)||(3528295-3528353)
chr4 (156-201)||(15787473-15787518)
chr4 (158-219)||(28655675-28655736)
chr4 (170-211)||(50531717-50531758)
chr4 (147-179)||(44302811-44302843)
chr4 (159-219)||(47667281-47667341)
chr4 (159-219)||(56001222-56001281)
[»] chr7 (34 HSPs)
chr7 (62-214)||(43111435-43111586)
chr7 (64-188)||(24493993-24494122)
chr7 (228-295)||(24494257-24494324)
chr7 (87-179)||(24495044-24495136)
chr7 (228-284)||(35528677-35528733)
chr7 (101-177)||(30223971-30224047)
chr7 (101-177)||(36673831-36673907)
chr7 (87-179)||(44113460-44113552)
chr7 (90-219)||(26407355-26407485)
chr7 (101-173)||(41126284-41126356)
chr7 (126-177)||(30222716-30222767)
chr7 (158-219)||(13446611-13446672)
chr7 (156-205)||(14107932-14107981)
chr7 (156-205)||(14417889-14417938)
chr7 (101-177)||(41618494-41618570)
chr7 (118-173)||(7345976-7346031)
chr7 (169-219)||(25532257-25532307)
chr7 (82-146)||(21868770-21868833)
chr7 (159-219)||(28326343-28326403)
chr7 (101-173)||(34558300-34558372)
chr7 (101-173)||(36672868-36672940)
chr7 (101-173)||(41127170-41127242)
chr7 (156-219)||(43931819-43931882)
chr7 (154-201)||(44114627-44114674)
chr7 (160-210)||(12631499-12631548)
chr7 (113-201)||(18670475-18670562)
chr7 (104-173)||(2903092-2903161)
chr7 (170-211)||(10257349-10257390)
chr7 (156-201)||(40926490-40926535)
chr7 (162-219)||(45721719-45721776)
chr7 (106-179)||(49162287-49162360)
chr7 (101-177)||(2904042-2904118)
chr7 (167-211)||(32653577-32653621)
chr7 (101-165)||(41616669-41616733)
[»] chr1 (34 HSPs)
chr1 (101-219)||(51217663-51217781)
chr1 (106-219)||(34654293-34654406)
chr1 (87-179)||(37624563-37624655)
chr1 (87-179)||(9415655-9415747)
chr1 (101-179)||(51218959-51219037)
chr1 (101-177)||(2237973-2238049)
chr1 (101-177)||(35684198-35684273)
chr1 (126-173)||(14312845-14312892)
chr1 (101-173)||(1061451-1061523)
chr1 (101-173)||(2236858-2236930)
chr1 (87-179)||(22766813-22766905)
chr1 (87-179)||(23082119-23082211)
chr1 (111-179)||(27689338-27689406)
chr1 (87-179)||(30551582-30551674)
chr1 (101-173)||(35683100-35683172)
chr1 (101-225)||(37623295-37623419)
chr1 (101-177)||(48935105-48935181)
chr1 (156-219)||(9210074-9210137)
chr1 (101-179)||(44977266-44977344)
chr1 (105-182)||(52741537-52741614)
chr1 (104-164)||(1872985-1873045)
chr1 (105-177)||(34531712-34531784)
chr1 (101-173)||(48934286-48934358)
chr1 (101-177)||(48973243-48973319)
chr1 (156-219)||(26054997-26055060)
chr1 (156-219)||(49139901-49139964)
chr1 (127-201)||(9417068-9417142)
chr1 (113-179)||(29001115-29001181)
chr1 (104-225)||(27690576-27690697)
chr1 (105-165)||(9119851-9119911)
chr1 (159-211)||(33941420-33941472)
chr1 (101-161)||(34532713-34532773)
chr1 (159-211)||(50679782-50679834)
chr1 (239-279)||(51217951-51217991)
[»] chr3 (38 HSPs)
chr3 (62-193)||(7483116-7483246)
chr3 (87-179)||(7483518-7483610)
chr3 (118-219)||(7921596-7921697)
chr3 (104-219)||(26797367-26797482)
chr3 (156-219)||(17345410-17345473)
chr3 (101-177)||(53049032-53049108)
chr3 (101-173)||(5416243-5416315)
chr3 (101-173)||(53047942-53048014)
chr3 (156-219)||(8372569-8372632)
chr3 (156-219)||(32980405-32980468)
chr3 (101-179)||(39133062-39133140)
chr3 (101-177)||(32973184-32973260)
chr3 (105-177)||(39287519-39287591)
chr3 (101-173)||(48035323-48035395)
chr3 (101-177)||(52293518-52293594)
chr3 (101-173)||(55443549-55443621)
chr3 (156-219)||(43345419-43345482)
chr3 (156-214)||(11220616-11220674)
chr3 (101-179)||(17350095-17350173)
chr3 (156-225)||(25585780-25585849)
chr3 (101-173)||(5417047-5417119)
chr3 (101-173)||(32974222-32974294)
chr3 (101-173)||(53342761-53342833)
chr3 (126-173)||(11481971-11482018)
chr3 (130-173)||(40502214-40502257)
chr3 (98-177)||(48825854-48825933)
chr3 (101-139)||(34901697-34901735)
chr3 (82-179)||(34902987-34903084)
chr3 (165-219)||(53809446-53809500)
chr3 (156-201)||(19252973-19253018)
chr3 (104-201)||(19622890-19622987)
chr3 (158-219)||(31281074-31281135)
chr3 (104-173)||(40501856-40501925)
chr3 (158-219)||(55425555-55425616)
chr3 (111-179)||(31638173-31638241)
chr3 (101-169)||(39288442-39288510)
chr3 (101-173)||(52292639-52292711)
chr3 (101-173)||(52705307-52705379)
[»] chr5 (25 HSPs)
chr5 (156-219)||(5384299-5384362)
chr5 (106-219)||(14212144-14212256)
chr5 (101-219)||(41905220-41905338)
chr5 (156-219)||(1273189-1273252)
chr5 (102-173)||(20991648-20991719)
chr5 (98-177)||(4566993-4567072)
chr5 (98-177)||(15510258-15510337)
chr5 (156-210)||(32735441-32735495)
chr5 (159-211)||(21389104-21389156)
chr5 (101-173)||(22650627-22650699)
chr5 (156-219)||(22812339-22812403)
chr5 (87-210)||(12829601-12829724)
chr5 (156-215)||(15857575-15857634)
chr5 (166-219)||(10978229-10978282)
chr5 (159-219)||(8188153-8188213)
chr5 (101-173)||(15509240-15509312)
chr5 (101-177)||(20988735-20988811)
chr5 (87-210)||(12861580-12861703)
chr5 (156-219)||(12936055-12936118)
chr5 (101-172)||(32521922-32521993)
chr5 (101-179)||(41906391-41906469)
chr5 (87-136)||(14210174-14210223)
chr5 (101-173)||(4567973-4568045)
chr5 (159-211)||(18695608-18695660)
chr5 (89-137)||(19825907-19825955)
[»] scaffold0084 (1 HSPs)
scaffold0084 (126-219)||(11776-11869)
[»] scaffold0046 (1 HSPs)
scaffold0046 (89-215)||(24772-24898)
[»] scaffold0024 (1 HSPs)
scaffold0024 (123-180)||(72978-73035)
[»] scaffold0177 (1 HSPs)
scaffold0177 (101-177)||(1800-1876)
[»] scaffold0015 (1 HSPs)
scaffold0015 (104-179)||(207791-207866)
[»] scaffold0290 (1 HSPs)
scaffold0290 (101-219)||(8424-8542)
[»] chr6 (12 HSPs)
chr6 (101-219)||(18773699-18773817)
chr6 (101-177)||(2138632-2138708)
chr6 (101-173)||(8447266-8447338)
chr6 (101-173)||(8456070-8456142)
chr6 (101-164)||(28225469-28225532)
chr6 (105-177)||(19368513-19368585)
chr6 (101-163)||(13176342-13176404)
chr6 (101-211)||(13279402-13279511)
chr6 (156-197)||(31740247-31740288)
chr6 (156-201)||(33807789-33807834)
chr6 (101-173)||(19367762-19367834)
chr6 (101-173)||(26584036-26584108)
[»] scaffold0038 (1 HSPs)
scaffold0038 (101-164)||(25967-26030)
[»] scaffold0002 (1 HSPs)
scaffold0002 (101-177)||(458455-458531)
[»] scaffold0045 (1 HSPs)
scaffold0045 (134-201)||(75823-75890)
[»] scaffold0025 (1 HSPs)
scaffold0025 (159-226)||(54694-54761)
[»] scaffold0687 (1 HSPs)
scaffold0687 (159-219)||(6516-6577)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 26206217 - 26206000
Alignment:
Q  1 ttcgttgcttaaccattggctttcaaatttacacgtgtcatatatgttgtaaaaataaggtttcgttggtctcttgacttaaattcttttttcagtatga 100  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||    
T  26206217 ttcgttgcttaaccattggctttcaaattcacatgtgtcatatatgttgtaaaaataaggtttcgttggtctcttaacttaattctttttttcagtatga 26206118  T
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttata 200  Q
    |||||||| ||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  26206117 tcccctaattaaaaaa-gtcataaattgatcccttatgtcttttgtcattacctcttttggtcctctccgttagttttttaatgactaatattttatata 26206019  T
Q  201 taatttcaaccattcgatt 219  Q
    |||||||||||||||||||    
T  26206018 taatttcaaccattcgatt 26206000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 4513822 - 4513706
Alignment:
Q  103 ccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatata 202  Q
    |||||||||||||||||||||||||||||  ||||||||| |||| |||| ||||||| | |||||||||||||||||| | | |||||||||| |||||    
T  4513822 ccctaactaaaaaacgtcttaaattggtcttttatgtcttctgtcgttacctcttttgattctctccgttagttttttattaaataatatttttgatata 4513723  T
Q  203 atttcaaccattcgatt 219  Q
    |||||||||||| ||||    
T  4513722 atttcaaccatttgatt 4513706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 26205045 - 26205136
Alignment:
Q  88 tttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||| |||||||||||| |||||||||||||||| |||||||||||||||||||| |  | |||| || |||||||||||||||||||||||    
T  26205045 ttttgcagtatgatcccttaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcgtttggtcctctccgttagttttt 26205136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 26205883 - 26205825
Alignment:
Q  221 cagatttcgttttcctctttctcttctctcccagtacacaaaatctccaagatccaatc 279  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26205883 cagatttcgttttcctctttctcttctctcccagttcacaaaatctccaagatccaatc 26205825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 8538685 - 8538584
Alignment:
Q  111 aaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatataatttcaac 210  Q
    ||||||||||| |||||||||||||||   ||  ||| |||| | |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  8538685 aaaaaacgtctcaaattggtcccttatacattccgtcgttacctattttggtcatctccgttaattttttaatgactaatatttttgatataatttcaac 8538586  T
Q  211 ca 212  Q
    ||    
T  8538585 ca 8538584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 28108865 - 28109000
Alignment:
Q  84 ttcttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaat 183  Q
    |||| |||||||| || ||| |||||||||||| | ||||||||||||||||||||  |||||| |||| | |||| ||||||||  ||| |||||| ||    
T  28108865 ttctattttcagtttggtcctctaactaaaaaatgacttaaattggtcccttatgttatttgtcgttacttattttagtcctctctattaatttttttat 28108964  T
Q  184 gactaatattttttatataatttcaaccattcgatt 219  Q
    | |||||| |||| |||  |||| ||||||||||||    
T  28108965 gtctaataattttgatacgatttaaaccattcgatt 28109000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 41296525 - 41296447
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||| |||||||||||||| | || |||||||||||||| ||||||| |||  ||||||||||||||||||||||||||    
T  41296525 tcccttaactaaaaaacgtttcaatttggtcccttatgttttttgtcgttatctcttttggtcctctccgttagttttt 41296447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 4830693 - 4830628
Alignment:
Q  154 tcttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||| ||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||    
T  4830693 tcttttagtcctctccgttagtttttgaatgtctaatatttttgatatgatttcaaccattcgatt 4830628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 2305582 - 2305661
Alignment:
Q  98 tgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||||||||||||| |||  |||| || ||||||||||||||||| || | |||| ||||||||||||||||||||||||    
T  2305582 tgatcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgttagttt 2305661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 37982699 - 37982777
Alignment:
Q  64 cgttggtctcttgacttaaattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtctt 142  Q
    |||||||| ||| |||||| |||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  37982699 cgttggtcccttaacttaa-ttctttttctcagtatggttccctaactaaaaaacgtctcaaattggtcccttatgtctt 37982777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 40174780 - 40174718
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  40174780 ttttggtcatctccgttagttttttaatgt-taatattttttatatgatttcaaccattcgatt 40174718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 4512151 - 4512229
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||| |||||||||||||||| ||||||||||||| |||||| |  | |||| |||||||||||||||| |||||||||    
T  4512151 tcccataactaaaaaacgtctcaaattggtcccttgtgtcttcttccgttacctcttttggtcctctccattagttttt 4512229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 23178898 - 23178829
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatttcagat 225  Q
    |||||||| ||||||||||||||||||||  ||| |||| | |||||||||||||||||||||| |||||    
T  23178898 ttttggtcatctccgttagttttttaatgtgtaacatttctgatataatttcaaccattcgattgcagat 23178829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 23590155 - 23590086
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatttcagat 225  Q
    |||||||| ||||||||||||||||||||  ||| |||| | |||||||||||||||||||||| |||||    
T  23590155 ttttggtcatctccgttagttttttaatgtgtaacatttctgatataatttcaaccattcgattgcagat 23590086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 6707026 - 6707089
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||| ||||||||||||||||||| | ||||||| | ||||||||||||||||| ||||    
T  6707026 ttttggtcccctccgttagttttttaatgtcaaatatttatgatataatttcaaccattagatt 6707089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 36422782 - 36422692
Alignment:
Q  111 aaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    ||||||||| | ||||||||||||||||| || |||| |||  | ||||||| ||||| | ||||||||||||| ||||||||||| ||||    
T  36422782 aaaaaacgtttcaaattggtcccttatgtattatgtcgttatctattttggtactctcagatagttttttaatgtctaatatttttaatat 36422692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 8537062 - 8537135
Alignment:
Q  106 taactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||||| |||| ||||||||||||||||| || |||| |||  | |||||||| |||||||||||||||    
T  8537062 taactaaaaaatgtctcaaattggtcccttatgtattctgtcgttatctattttggtcatctccgttagttttt 8537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 3254926 - 3254973
Alignment:
Q  126 ttggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||    
T  3254926 ttggtcccttatgtcttttgtcgttacctcttttggtcctatccgtta 3254973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 2306732 - 2306656
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||  |||  |||| || ||||||| ||||||||| || | |||| ||||||||||||||||||||||||    
T  2306732 tcccctaactgtaaagtgtctcaatttggtccattatgtcttctgccgttacctcttttggtcctctccgttagttt 2306656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 4630155 - 4630083
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || |||||| ||||||||||||||  |||| |||||||||||| |||||||    
T  4630155 tcccctaactataaagtgtctcaatttggtctcttatgtcttttgttgttacctcttttggtcctatccgtta 4630083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 33836814 - 33836890
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || ||||||  ||||||||| | || |||| ||||||||||||||||||||||||    
T  33836814 tcccctaactataaagtgtctcaatttggtcatttatgtcttctatcgttacctcttttggtcctctccgttagttt 33836890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 33837826 - 33837754
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||  |||||||||||||||||| |||| |||||||||||| |||||||    
T  33837826 tcccctaactataaagtgtctcaatttaatcccttatgtcttttgtcgttacctcttttggtcctatccgtta 33837754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 7038356 - 7038293
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||| |||||| |||||||||||  || ||||||| ||||  ||||||||||||||||    
T  7038356 ttttggtcctttccgtttgttttttaatgtttactatttttgatattgtttcaaccattcgatt 7038293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 41312570 - 41312621
Alignment:
Q  126 ttggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||||| |||||||||| || | |||| ||||||||||||||||||||||||    
T  41312570 ttggtctcttatgtcttatgccgttacctcttttggtcctctccgttagttt 41312621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 14714537 - 14714615
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||| ||||| |||||||| | ||||||||  |||||||||| |  | ||||  |||||||||||||||||||||||||    
T  14714537 tcccttaacttaaaaacgtttcaaattggttgcttatgtcttcttccgttaccacttttggtcctctccgttagttttt 14714615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 14716218 - 14716148
Alignment:
Q  149 ttacatcttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||| |||||||||||||||| |||||||||||||  ||||||| ||| || | ||||||  |||||||||    
T  14716218 ttacctcttttggtcctctccattagttttttaatatctaatatctttgatttgatttcagtcattcgatt 14716148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 41295150 - 41295186
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttat 137  Q
    |||||||| |||||||||||| |||||||||||||||    
T  41295150 tcccctaattaaaaaacgtctcaaattggtcccttat 41295186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 41313338 - 41313266
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||| |||||||||||||||| | |||| |||||||||| | |||||||    
T  41313338 tcccctaactataaagtgtctgaatttgatcccttatgtcttttgccgttacctcttttggtcttatccgtta 41313266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 42596673 - 42596729
Alignment:
Q  169 cgttagttttttaatgactaatattttttatataatttcaaccattcgatttcagat 225  Q
    |||||||||||||||| |||||| | || |||||| ||||||||| ||||| |||||    
T  42596673 cgttagttttttaatgtctaataatgttgatataacttcaaccatccgattgcagat 42596729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 13514956 - 13514818
Alignment:
Q  82 aattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagtttttt 180  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| |    |||| |||||||||| ||||||||||||||||    
T  13514956 aattctttttctcagtatggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgttagtttttt 13514857  T
Q  181 aatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||| ||||| ||||||||| ||||||||||||    
T  13514856 aatgactaatgtttttgatataatttaaaccattcgatt 13514818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 13604489 - 13604351
Alignment:
Q  82 aattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagtttttt 180  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| |    |||| |||||||||| ||||||||||||||||    
T  13604489 aattctttttctcagtatggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgttagtttttt 13604390  T
Q  181 aatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||| ||||| ||||||||| ||||||||||||    
T  13604389 aatgactaatgtttttgatataatttaaaccattcgatt 13604351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 44101979 - 44102112
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaa-aacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatga 185  Q
    ||||||||| ||| |  ||||||||||| ||||||| ||||||||| |||||||||| |  | |||| ||||||||||||||| ||||||||||||||||    
T  44101979 ttttttcagaatggtgtcctaactaaaaaaacgtctcaaattggtctcttatgtcttcttccgttacctcttttggtcctctctgttagttttttaatga 44102078  T
Q  186 ctaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||||||||||||| ||||||||| ||||    
T  44102079 ctaatattttttatataatctcaaccattggatt 44102112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 21670072 - 21670187
Alignment:
Q  64 cgttggtctcttgacttaaattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggt 162  Q
    |||||||| ||| |||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| |  | |||| |||||||||    
T  21670072 cgttggtcccttaacttaa-ttctttttctcagtatggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcttttggt 21670170  T
Q  163 cctctccgttagttttt 179  Q
    | |||||||||||||||    
T  21670171 cttctccgttagttttt 21670187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 39323835 - 39323950
Alignment:
Q  104 cctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatataa 203  Q
    |||||||||||||||||| |||||| || |||||||||| |  | |||| |||||||||||||||||||||||||| ||   ||||||||||| ||||||    
T  39323835 cctaactaaaaaacgtctcaaattgatctcttatgtcttcttccgttacctcttttggtcctctccgttagtttttcaagatctaatatttttgatataa 39323934  T
Q  204 tttcaaccattcgatt 219  Q
    ||| ||||||| ||||    
T  39323935 ttttaaccattagatt 39323950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 16362512 - 16362582
Alignment:
Q  149 ttacatcttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||    
T  16362512 ttacatcttttggtcctctccgttagttttttaatgtctaatatttttgatatgatttcaaccgttcgatt 16362582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 44103381 - 44103289
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||||| || ||||||||||||||||||||||||| ||||||||| |||||||||| |  | || | ||||||||||||||||||||||||||    
T  44103381 tttttttagaatgatcccctaactaaaaaacgtctcaaattggtctcttatgtcttcttccgtttcctcttttggtcctctccgttagttttt 44103289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 13513445 - 13513543
Alignment:
Q  82 aattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||| |    |||| ||||||||||||||||||||| ||||    
T  13513445 aattctttttctcaatatggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgttagctttt 13513543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 13602978 - 13603076
Alignment:
Q  82 aattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||| |    |||| ||||||||||||||||||||| ||||    
T  13602978 aattctttttctcaatatggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgttagctttt 13603076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 8397319 - 8397211
Alignment:
Q  111 aaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatataatttcaac 210  Q
    ||||||||||| ||||| |||| |||||| || || |||||  | | |||||| |||||||||||||| |||||| |||||||||| |||||||||||||    
T  8397319 aaaaaacgtctcaaattagtccattatgtattatgccattatctatcttggtcatctccgttagttttataatgattaatatttttgatataatttcaac 8397220  T
Q  211 cattcgatt 219  Q
    |||| ||||    
T  8397219 catttgatt 8397211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 40251441 - 40251313
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgac 186  Q
    ||||||||  |||||||  ||| |||||||||||| ||| |  |||||||||| || | |  |||| | |||||||||||||  ||| |||||||||| |    
T  40251441 ttttttcataatgatcctataagtaaaaaacgtctcaaactcatcccttatgtattatattgttacgtattttggtcctctcaattaattttttaatgtc 40251342  T
Q  187 taatattttttatataatttcaaccattc 215  Q
    |||||||||| |||| |||||||||||||    
T  40251341 taatatttttgatatgatttcaaccattc 40251313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 21961871 - 21961946
Alignment:
Q  104 cctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||| |||||||||||| |||||| ||||||||||||| |  | |||  ||||||||||||||||||||||||||    
T  21961871 cctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgttagttttt 21961946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 34616234 - 34616297
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||| | ||||||||||||||||||  |||||||||| |||| |||||||||||||||||    
T  34616234 ttttggtcatttccgttagttttttaatgtttaatatttttaatatgatttcaaccattcgatt 34616297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 37274987 - 37275050
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||||||  ||| |||| | |||| |||||||||||||||||    
T  37274987 ttttggtcctctccgttagttttttaatgtataacatttctgatatgatttcaaccattcgatt 37275050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 13363639 - 13363571
Alignment:
Q  111 aaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||| | || |||||||||||||| || |||  |||| ||||||||||||||||||||||||||    
T  13363639 aaaaaacgtttcaatttggtcccttatgttttctgtggttacctcttttggtcctctccgttagttttt 13363571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 10053815 - 10053736
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagtttttt 180  Q
    |||| |||||| |||  |||| || ||||||||||||||||| |||| |||| ||||||||| |||||||||| ||||||    
T  10053815 tcccttaactataaagtgtctcaagttggtcccttatgtcttatgtcgttacctcttttggttctctccgttaatttttt 10053736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 13514652 - 13514610
Alignment:
Q  237 ctttctcttctctcccagtacacaaaatctccaagatccaatc 279  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  13514652 ctttctcttctctcccactacacaaaatctccaagattcaatc 13514610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 13604185 - 13604143
Alignment:
Q  237 ctttctcttctctcccagtacacaaaatctccaagatccaatc 279  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  13604185 ctttctcttctctcccactacacaaaatctccaagattcaatc 13604143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 39325905 - 39325867
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgt 139  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  39325905 tcccctaactaaaaaacgttttaaattggtcccttatgt 39325867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 38664426 - 38664495
Alignment:
Q  113 aaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaa 182  Q
    ||||||||| |||||| |||||||||||||||  | |||| ||||||| || | ||||||||||||||||    
T  38664426 aaaacgtctcaaattgttcccttatgtcttttaccgttacctcttttgttcatatccgttagttttttaa 38664495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 44607332 - 44607287
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    ||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  44607332 ttttggtcctctcagttagttttttaatgtctaatatttttaatat 44607287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 7770100 - 7770160
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||| ||||  |||||||| | |||| ||||||| ||||    
T  7770100 tggtcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgatt 7770160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 7777777 - 7777837
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||| ||||  |||||||| | |||| ||||||| ||||    
T  7777777 tggtcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgatt 7777837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 36940049 - 36939986
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||| ||||||||| |||||||||  |||||| |||| ||||  ||||||||||||||||    
T  36940049 ttttggtcatctccgttaattttttaatatctaataattttgatatggtttcaaccattcgatt 36939986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 10052149 - 10052227
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||||||| || |||  |||| |||||||||||||||||| | || | |||| |||||||||| ||||| |||||||||    
T  10052149 tcccctaattataaagtgtctcaaattggtcccttatgtcatctgccgttacctcttttggtcatctcctttagttttt 10052227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 13360398 - 13360436
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgt 139  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  13360398 tcccctaattaaaaaacgtctcaaattggtcccttatgt 13360436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 7795869 - 7795930
Alignment:
Q  159 tggtcctctccgttagttttttaatgact-aatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||| || ||| |||||||| | |||| ||||||| ||||    
T  7795869 tggtcctctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgatt 7795930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 7815146 - 7815207
Alignment:
Q  159 tggtcctctccgttagttttttaatgact-aatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||| || ||| |||||||| | |||| ||||||| ||||    
T  7815146 tggtcctctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgatt 7815207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 44102272 - 44102329
Alignment:
Q  227 tcgttttcctctttctcttctct-----cccagtacacaaaatctccaagatccaatc 279  Q
    |||||||||||||||||||||||     |||| |||| ||||||||||||||||||||    
T  44102272 tcgttttcctctttctcttctcttctatcccactacaaaaaatctccaagatccaatc 44102329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 24068431 - 24068463
Alignment:
Q  157 tttggtcctctccgttagttttttaatgactaa 189  Q
    |||||||||||||||||||||||||||| ||||    
T  24068431 tttggtcctctccgttagttttttaatgtctaa 24068463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 35945438 - 35945390
Alignment:
Q  171 ttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||||||||  |||||||||| || | |||||||||||||||||    
T  35945438 ttagttttttaatgtttaatatttttgatgtgatttcaaccattcgatt 35945390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 36604448 - 36604577
Alignment:
Q  64 cgttggtctcttgacttaaattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggt 162  Q
    |||||||| ||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |    
T  36604448 cgttggtcccttaacttaa-ttctttttctcagtatggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctcttttgat 36604546  T
Q  163 cctctccgttagttttttaatgactaatatt 193  Q
    | ||||||||||||||||| |||||||||||    
T  36604547 catctccgttagttttttattgactaatatt 36604577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 18358481 - 18358351
Alignment:
Q  64 cgttggtctcttgacttaaattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggt 162  Q
    |||||||| ||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |    
T  18358481 cgttggtcccttaacttaa-ttctttttctcagtatggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctcttttgat 18358383  T
Q  163 cctctccg-ttagttttttaatgactaatatt 193  Q
    | |||||| ||||||||||| |||||||||||    
T  18358382 catctccgtttagttttttattgactaatatt 18358351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 2292195 - 2292307
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttata 200  Q
    |||||||||||||||||| || |||||||||||||||||||| |  | |||| ||| ||||||||||| ||||||||||||||||||||||||||| |||    
T  2292195 tcccctaactaaaaaacgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctctgttagttttttaatgactaatatttttgata 2292294  T
Q  201 taatttcaaccat 213  Q
    |||||||||||||    
T  2292295 taatttcaaccat 2292307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 38371909 - 38371758
Alignment:
Q  68 ggtctcttgacttaaattcttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctct 167  Q
    |||||||| |||||  |||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |||| | |||| ||  |||    
T  38371909 ggtctcttaacttattttctgttttcagtttgatcccctaactaaaaaacgtctcaaattgatcccttatgtcttttgtcgttacctattttagttatct 38371810  T
Q  168 ccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    | | ||||||||| ||| |||||| |||| ||| ||||| ||||||||||||    
T  38371809 ctgatagttttttgatgtctaataattttgatacaatttaaaccattcgatt 38371758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 36604950 - 36604834
Alignment:
Q  64 cgttggtctcttgacttaaattcttttt--tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttgg 161  Q
    |||||||| ||| |||||| ||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| |  | |||| ||||||||    
T  36604950 cgttggtcccttaacttaa-ttctttttcctcagtatggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttgg 36604852  T
Q  162 tcctctccgttagttttt 179  Q
    ||||||||||||||||||    
T  36604851 tcctctccgttagttttt 36604834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 96752 - 96652
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttata 200  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||| ||| || ||||||||||| | ||||||||||| ||| ||||||||||| |||    
T  96752 tcccctaactataaagtgtcttaaattggtcccttatgtcttttgtcgttatatattttggtcctcgcagttagttttttgatgtctaatatttttaata 96653  T
Q  201 t 201  Q
    |    
T  96652 t 96652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 2293596 - 2293518
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||||||||||||||||||||||||||||||||||||||||| |  | | |  ||| ||||||||||||||||||||||    
T  2293596 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgtaatctctattggtcctctccgttagttttt 2293518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 53150452 - 53150526
Alignment:
Q  106 taactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagtttttt 180  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||  |||||||||| | |||||| |||||||    
T  53150452 taactaaaaaacgtcttaaactggtcccttatatcttttgtcattatctcttttggtcttatccgttggtttttt 53150526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 29833417 - 29833493
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||||||| || |||| |||| || |||||||||||| ||||||||| |||| ||||||||||||||||||||||||    
T  29833417 tcccctaattataaaatgtctcaatttggtcccttatatcttttgtcgttacctcttttggtcctctccgttagttt 29833493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 29686301 - 29686380
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagtttttt 180  Q
    |||| |||||| |||  |||| |||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||    
T  29686301 tcccttaactataaattgtctcaaattggtcccttatgtcttatgtcgttacctcttttggtcctctccgttaatttttt 29686380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 2292492 - 2292544
Alignment:
Q  239 ttctcttctctcccagtacacaaaatctccaagatccaatctcaatccaatcc 291  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  2292492 ttctcttctatcccactacacaaaatctccaagatccaatcccaatccaatcc 2292544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 6139097 - 6139152
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaacc 211  Q
    |||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||    
T  6139097 ttttggtcatctctgttagtattttaatgtctaatattttttatataatttcaacc 6139152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 2310853 - 2310781
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||| |||| || |||||||||||||||||||| | |||| ||||||| |||| |||||||    
T  2310853 tcccctaactataaaatgtctcaatttggtcccttatgtcttttgccgttacctcttttgatcctatccgtta 2310781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 19049946 - 19049882
Alignment:
Q  98 tgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggt 162  Q
    ||||||||||| || |||  |||| || ||||||||||||||||||||||||||| |||||||||    
T  19049946 tgatcccctaattataaagtgtctcaatttggtcccttatgtcttttgtcattacctcttttggt 19049882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 53151634 - 53151567
Alignment:
Q  111 aaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||||||||||||||||||||| ||||||||| |||| || |||| |||| || ||||||||||    
T  53151634 aaaaaacgtcttaaattggtcccttatctcttttgtcgttacctc-tttgatcctatcggttagttttt 53151567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 43895633 - 43895574
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattc 215  Q
    |||||||| ||||||||| |||||||||| ||||||||||| || |||||| ||||||||    
T  43895633 ttttggtcatctccgttaattttttaatgtctaatatttttgatgtaattttaaccattc 43895574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 29688020 - 29687971
Alignment:
Q  130 tcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||||||||||||||||| |||| |||||||||| ||||| |||||||||    
T  29688020 tcccttatgtcttttgtcgttacctcttttggtcatctcctttagttttt 29687971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 526790 - 526714
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || ||||||||||||||| | ||   |||| ||||||||||||||||||||||||    
T  526790 tcccctaactataaagtgtctcaacttggtcccttatgtcatctgatgttacctcttttggtcctctccgttagttt 526714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 46796039 - 46795979
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||| ||||  ||||| |||| |||| ||||||| ||||    
T  46796039 tggtcctctccgttagttttttaatgtctaaattttttgatatgattttaaccatttgatt 46795979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 52880859 - 52880931
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||| |||||||||||| | |||| |||||||||||| |||||||    
T  52880859 tcccctaactataaagtgtctcaatttggtcctttatgtcttttgccgttacctcttttggtcctatccgtta 52880931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 28103502 - 28103439
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||| |||||| |||||||||||  || ||||||| ||||  ||||||||||||||||    
T  28103502 ttttggtcctttccgtttgttttttaatgtttactatttttgatattgtttcaaccattcgatt 28103439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 43418137 - 43418196
Alignment:
Q  160 ggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||| ||||||||||| |||||||| ||||||||||| || | |||||||||||| ||||    
T  43418137 ggtcatctccgttagtattttaatgtctaatatttttgatttgatttcaaccatttgatt 43418196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 44690921 - 44690862
Alignment:
Q  106 taactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcct 165  Q
    |||||| |||| |||| || || |||||||||||||||||| ||||| ||||||||||||    
T  44690921 taactataaaatgtctcaatttagtcccttatgtcttttgttattacctcttttggtcct 44690862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 3528295 - 3528353
Alignment:
Q  161 gtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||| |||||||||||||| ||||| |||||||| | |||| ||||||| ||||    
T  3528295 gtcctctccattagttttttaatgtctaattttttttatgtgattttaaccatttgatt 3528353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 15787518 - 15787473
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    |||||||||||||| ||| |||||||||| ||||||||||| ||||    
T  15787518 ttttggtcctctccattaattttttaatgtctaatatttttaatat 15787473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 28655675 - 28655736
Alignment:
Q  158 ttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||| ||||||||||||||||||| ||||||| ||  |||| |||||| ||||| ||||    
T  28655675 ttggtccactccgttagttttttaatgcctaatatcttagatatgatttcagccattagatt 28655736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 50531758 - 50531717
Alignment:
Q  170 gttagttttttaatgactaatattttttatataatttcaacc 211  Q
    |||||| || ||||| ||||||||||||||||||||||||||    
T  50531758 gttagtattctaatgtctaatattttttatataatttcaacc 50531717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 44302811 - 44302843
Alignment:
Q  147 cattacatcttttggtcctctccgttagttttt 179  Q
    |||||| ||||||||||||||||||||||||||    
T  44302811 cattacctcttttggtcctctccgttagttttt 44302843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 47667281 - 47667341
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||| |||||||||||||||| ||||  |||||||| | |||| ||||||| ||||    
T  47667281 tggtcctctgcgttagttttttaatgtctaaatttttttatgtgattttaaccatttgatt 47667341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 56001281 - 56001222
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||| |||||||||||||||| ||||| |||||||| | |||| ||||||| ||||    
T  56001281 tggtcctcttcgttagttttttaatgtctaat-ttttttatgtgattttaaccatttgatt 56001222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 43111435 - 43111586
Alignment:
Q  62 ttcgttggtctcttgacttaaattcttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttgg 161  Q
    |||||||||| ||| |||||| |  |||||||||| || ||||||||||||||||||||| |||||| || ||||||||||||||| |||| | |||| |    
T  43111435 ttcgttggtcccttaacttaattctttttttcagtgtggtcccctaactaaaaaacgtctcaaattgatcacttatgtcttttgtcgttacct-tttttg 43111533  T
Q  162 tcctctccgttagttttttaatgactaatattttttatataatttcaaccatt 214  Q
    || ||||||||||||| ||| |||||||||||||| |||||||||||||||||    
T  43111534 tcatctccgttagtttattattgactaatatttttgatataatttcaaccatt 43111586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 24493993 - 24494122
Alignment:
Q  64 cgttggtctcttgacttaaattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggt 162  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||    
T  24493993 cgttggtctcttaacttaa-ttctttttctcagtatgatcccctaactaaaaaatgtctcaaattggtcccttatgtcttttgtcattacttcttttggt 24494091  T
Q  163 cctct----ccgttag-ttttttaatgacta 188  Q
    |||||    ||||||| ||||||||||||||    
T  24494092 cctctctctccgttagtttttttaatgacta 24494122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 24494257 - 24494324
Alignment:
Q  228 cgttttcctctttctcttctctcccagtacacaaaatctccaagatccaatctcaatccaatccaaaa 295  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  24494257 cgttttcctctttctcttctctcccactacacaaaatctccaagatccaatctcaattcaatccaaaa 24494324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 24495136 - 24495044
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||| |    |||| || |||||||||||||||||||||||    
T  24495136 ttttctcagtatgatcccttaactaaaaaacctctcaaattggtcccttatgtcttcttctgttacctcgtttggtcctctccgttagttttt 24495044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 35528677 - 35528733
Alignment:
Q  228 cgttttcctctttctcttctctcccagtacacaaaatctccaagatccaatctcaat 284  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  35528677 cgttttcctctttctcttctctcccactacacaaaatctccaagatccaatcccaat 35528733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 30224047 - 30223971
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || ||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  30224047 tcccctaactataaattgtctcaatttggtcccttatgtcttctgccgttacatcttttggtcctctccgttagttt 30223971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 36673907 - 36673831
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||| |||| || ||||||||||||||||| |||| |||| ||||||||||||||| ||||||||    
T  36673907 tcccctaactataaaatgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctcagttagttt 36673831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 44113460 - 44113552
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||  |||||||| |||||||||||||||| ||||||||||||||||| || || | |||| | ||||||||| || |||||||||||    
T  44113460 ttttttcataatgatcccttaactaaaaaacgtctcaaattggtcccttatgtattctgccgttacctattttggtccacttcgttagttttt 44113552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 26407485 - 26407355
Alignment:
Q  90 tttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta-gttttttaatgacta 188  Q
    ||||||| || ||| ||||||||||||||||| ||||||||| |||||||  |||||| |||| | |||| |||||||| ||||  |||||| ||| |||    
T  26407485 tttcagtttggtcctctaactaaaaaacgtctcaaattggtctcttatgttatttgtcgttacctattttagtcctctctgttatttttttttatgtcta 26407386  T
Q  189 atattttttatataatttcaaccattcgatt 219  Q
    ||| |||| |||  |||| ||||||||||||    
T  26407385 ataattttgatacgatttaaaccattcgatt 26407355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 41126284 - 41126356
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  41126284 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 41126356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 30222716 - 30222767
Alignment:
Q  126 ttggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  30222716 ttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttagttt 30222767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 13446672 - 13446611
Alignment:
Q  158 ttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||||  ||| |||| | |||| |||||||||||||||||    
T  13446672 ttggtcctctccgttagttttttaatgtgtaacatttctcatatgatttcaaccattcgatt 13446611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 14107932 - 14107981
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatt 205  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||||||    
T  14107932 ttttggtcctctccgttagttttttgatgtctaatatttttaatataatt 14107981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 14417889 - 14417938
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatt 205  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||||||    
T  14417889 ttttggtcctctccgttagttttttgatgtctaatatttttaatataatt 14417938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 41618570 - 41618494
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||||||| || |||  |||| || ||||||| ||||||||| |||| |||| ||||||||||||||||||||||||    
T  41618570 tcccctaattataaagtgtctaaatttggtccattatgtcttctgtcgttacctcttttggtcctctccgttagttt 41618494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 7345976 - 7346031
Alignment:
Q  118 gtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||| |||||||||||| ||||||||| |||| |||||||||||| |||||||    
T  7345976 gtcttaatttggtcccttatttcttttgtcgttacctcttttggtcctatccgtta 7346031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 25532257 - 25532307
Alignment:
Q  169 cgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||||||||||  |||||||||| |||| |||||||||||||||||    
T  25532257 cgttagttttttaatgtttaatatttttgatatgatttcaaccattcgatt 25532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 21868833 - 21868770
Alignment:
Q  82 aattcttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgt 146  Q
    ||||||||||||||||||||| | ||| |||||||||||| |||||  ||||| |||||||||||    
T  21868833 aattcttttttcagtatgatctc-taattaaaaaacgtctcaaattaatccctcatgtcttttgt 21868770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 28326403 - 28326343
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||| ||||  ||||| |||| |||| ||||||| ||||    
T  28326403 tggtcctctccgttagttttttaatgtctaaattttttaatatgattttaaccatttgatt 28326343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 34558372 - 34558300
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||   ||| || |||||||||||||||||||| | |||| |||||||||||| |||||||    
T  34558372 tcccctaactataaagtatctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 34558300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 36672868 - 36672940
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||   | ||||||||||||||| ||||||||| |||||| |||||| ||||| |||||||    
T  36672868 tcccctaactataaagtattttaaattggtcccttgtgtcttttgccattacctcttttagtcctatccgtta 36672940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 41127242 - 41127170
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||   ||| || ||||||| |||||||||||| | ||||||||||||||||| |||||||    
T  41127242 tcccctaactataaagtatctcaatttggtcctttatgtcttttgccgttacatcttttggtcctatccgtta 41127170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 43931882 - 43931819
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||| ||||||||||||||||||| |||| |||||| | || |||| || |||||||||    
T  43931882 ttttggtcccctccgttagttttttaatgtctaacatttttgaaatgatttgaatcattcgatt 43931819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 44114674 - 44114627
Alignment:
Q  154 tcttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    |||||||||||||||||||||||||||||||  | |||||||| ||||    
T  44114674 tcttttggtcctctccgttagttttttaatgtatcatatttttaatat 44114627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 12631548 - 12631499
Alignment:
Q  160 ggtcctctccgttagttttttaatgactaatattttttatataatttcaac 210  Q
    |||||||||||||||| |||||||| |||||||||||||| | ||||||||    
T  12631548 ggtcctctccgttagtattttaatg-ctaatattttttatttgatttcaac 12631499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 18670562 - 18670475
Alignment:
Q  113 aaaacgtcttaaattggtcccttatgtcttttgtcattacatct-tttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    |||| |||| ||||||||||||||||| || | || |||  ||| |||||||||||| |||||||||||||||  |||||||||| ||||    
T  18670562 aaaatgtctcaaattggtcccttatgtattatatcgtta--tctatttggtcctctctgttagttttttaatgtataatatttttaatat 18670475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 2903092 - 2903161
Alignment:
Q  104 cctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    |||||||| |||  |||| || |||||||||||||||||||  |||||| | |||||||||| |||||||    
T  2903092 cctaactataaagtgtctcaatttggtcccttatgtctttttccattaccttttttggtcctatccgtta 2903161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 10257390 - 10257349
Alignment:
Q  170 gttagttttttaatgactaatattttttatataatttcaacc 211  Q
    |||||| || ||||| ||||||||||||||||||||||||||    
T  10257390 gttagtattctaatgtctaatattttttatataatttcaacc 10257349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 40926535 - 40926490
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    ||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  40926535 ttttggtcctctccgttaactttttaatgtctaatatttttaatat 40926490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 45721776 - 45721719
Alignment:
Q  162 tcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||||||||||||||||| ||||  |||||||| | |||| ||||||| ||||    
T  45721776 tcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgatt 45721719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 49162287 - 49162360
Alignment:
Q  106 taactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||||||||||||| | ||||||||||||||||| || || | || | | ||||||||| || |||||||||||    
T  49162287 taactaaaaaacgtttaaaattggtcccttatgtattctgccgtttcctattttggtccacttcgttagttttt 49162360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 2904118 - 2904042
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||| |||| || || ||   ||||||||| || | |||| ||||||||||||||||||||||||    
T  2904118 tcccctaactataaaatgtctcaatttagtttgttatgtcttctgccgttacctcttttggtcctctccgttagttt 2904042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 32653577 - 32653621
Alignment:
Q  167 tccgttagttttttaatgactaatattttttatataatttcaacc 211  Q
    ||||||||||||||||||||||| |||||| |||| |||| ||||    
T  32653577 tccgttagttttttaatgactaaaatttttgatatcattttaacc 32653621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 41616669 - 41616733
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcct 165  Q
    ||||||||||| |||  |||| || |||||||||||||||||||||| |||  ||||||| ||||    
T  41616669 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttatctcttttgatcct 41616733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 51217663 - 51217781
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttata 200  Q
    |||||||| ||||||| | || |||||||||||||||||||| |  | |||| ||| ||||||||||||||||||||||||||||||||||||||| |||    
T  51217663 tcccctaattaaaaaatgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctccgttagttttttaatgactaatatttttgata 51217762  T
Q  201 taatttcaaccattcgatt 219  Q
    |||||||||||||| ||||    
T  51217763 taatttcaaccattagatt 51217781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 34654406 - 34654293
Alignment:
Q  106 taactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatataatt 205  Q
    |||||| ||||||| | || |||||| |||||||||| |  | |||| ||| |||||||||||||||| ||||| |||||||||||||||| |||| |||    
T  34654406 taactataaaacgtttcaatttggtctcttatgtcttctaccgttacctctattggtcctctccgttaatttttaaatgactaatatttttaatatgatt 34654307  T
Q  206 tcaaccattcgatt 219  Q
    ||||||||||||||    
T  34654306 tcaaccattcgatt 34654293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 37624655 - 37624563
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||  ||| |||| |||||||||||||| | || ||||||| |||||| || |||| |||||||||||||||||||||||||||||||    
T  37624655 ttttttcaaaatggtcccttaactaaaaaacgtttcaatttggtccgttatgttttctgtcgttacatcttttggtcctctccgttagttttt 37624563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 9415655 - 9415747
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||  ||| |||| |||||||||||||||||||||||||||||||||| || || | |||| | ||||||||| || |||||||||||    
T  9415655 ttttttcataatggtcccttaactaaaaaacgtcttaaattggtcccttatgtattatgccgttacctattttggtccacttcgttagttttt 9415747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 51219037 - 51218959
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||||||||||||||| |||||||||||||||||||| |  | |||  ||  ||||||||||||||||||||||    
T  51219037 tcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttaactcaattggtcctctccgttagttttt 51218959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 2238049 - 2237973
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||| |||||| |||  |||| || ||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  2238049 tcccataactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttagttt 2237973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 35684273 - 35684198
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || ||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  35684273 tcccctaactataaat-gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttagttt 35684198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 14312845 - 14312892
Alignment:
Q  126 ttggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  14312845 ttggtcccttatgtcttttgtcattacctcttttggtcctatccgtta 14312892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 1061523 - 1061451
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  ||||||| |||||| ||||||||||||| | |||| |||||||||||| |||||||    
T  1061523 tcccctaactataaagtgtcttaatttggtcacttatgtcttttgccgttacctcttttggtcctatccgtta 1061451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 2236858 - 2236930
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||||||||||||| |||| |||| ||||||| ||||||||||||    
T  2236858 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttgatcctctccgtta 2236930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 22766905 - 22766813
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||  ||| |||| |||||||||||||| | || ||| |||||||||| || |||| || | |||||||||||| |||||||||||||    
T  22766905 ttttttcaaaatggtcccttaactaaaaaacgtttcaatttgatcccttatgttttctgtcgttgcctcttttggtcctttccgttagttttt 22766813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 23082211 - 23082119
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||  ||| |||| |||||||||||||| | || |||||||||||| | || |||| || | |||||||||||| |||||||||||||    
T  23082211 ttttttcaaaatggtcccttaactaaaaaacgtttcaatttggtcccttatattttctgtcgttgcctcttttggtcctttccgttagttttt 23082119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 27689338 - 27689406
Alignment:
Q  111 aaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||| | || |||||| ||||||| || |||| |||| ||||||||||||||||||||||||||    
T  27689338 aaaaaacgtttcaatttggtctcttatgttttctgtcgttacctcttttggtcctctccgttagttttt 27689406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 30551674 - 30551582
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||  ||| |||| |||||||||||| | | || |||||||||||||| || | || |||| |||||||||| |||||||||||||||    
T  30551674 ttttttcaaaatggtcccttaactaaaaaacatttcaatttggtcccttatgttttctatcgttacctcttttggtcatctccgttagttttt 30551582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 35683100 - 35683172
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||||||||||||| || | |||| ||||||||||||||||||||    
T  35683100 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgtta 35683172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 37623295 - 37623419
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttata 200  Q
    |||||||| |||||||||||||||||||||||||||| | ||||  | |||  | |||||||| || | ||||||||||| ||   |||||||| | |||    
T  37623295 tcccctaattaaaaaacgtcttaaattggtcccttatatattttaccgttatctattttggtcatcgcagttagttttttgattcttaatatttgtaata 37623394  T
Q  201 taatttcaaccattcgatttcagat 225  Q
    | |||  |||||||||||| |||||    
T  37623395 tgattataaccattcgattgcagat 37623419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 48935181 - 48935105
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || ||||||||||||||||| || | |||| |||||||||| |||||||||||||    
T  48935181 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgttagttt 48935105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 9210137 - 9210074
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||| || ||||||||||||||||| || ||||| || ||||||||||||||||| ||||    
T  9210137 ttttggtcatcgccgttagttttttaatgtcttatattcttgatataatttcaaccatttgatt 9210074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 44977266 - 44977344
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||||| |||  |||||||| |||||||||||||||| || | |||| || ||||||| |||| ||||||||||    
T  44977266 tcccctaactataaagtgtcttaaactggtcccttatgtcttctgccgttacctcatttggtcatctctgttagttttt 44977344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 52741537 - 52741614
Alignment:
Q  105 ctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaa 182  Q
    ||||||| |||  |||| |||||| ||||||||||||| |||||||   | |||||||||||||| ||||||||||||    
T  52741537 ctaactataaagtgtctcaaattgatcccttatgtcttctgtcatttattgttttggtcctctccattagttttttaa 52741614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 1872985 - 1873045
Alignment:
Q  104 cctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcc 164  Q
    ||||| ||||||  ||||||| |||||||||||||||||||| | |||| |||||||||||    
T  1872985 cctaattaaaaagtgtcttaatttggtcccttatgtcttttgccgttacctcttttggtcc 1873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 34531712 - 34531784
Alignment:
Q  105 ctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||| |||| |||| || |||||| |||||||||| |||| |||  |||||||||||||||||| |||||    
T  34531712 ctaactataaaatgtctcaatttggtctcttatgtcttctgtcgttatctcttttggtcctctccgtaagttt 34531784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 48934286 - 48934358
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || |||||||||||||||| ||| | |||| |||||||||||| |||||||    
T  48934286 tcccctaactataaagtgtctcaatttggtcccttatgtctattgacgttacctcttttggtcctatccgtta 48934358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 48973243 - 48973319
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || ||| ||||||||||||| |||| |||| |||||||| |||||| ||||||||    
T  48973243 tcccctaactataaagtgtctcaatttgatcccttatgtcttctgtcgttacctcttttggccctctctgttagttt 48973319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 26054997 - 26055060
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||  || |||||||||||||||| | ||||||| | ||||||||||||||||| ||||    
T  26054997 ttttggtctccttcgttagttttttaatgtcaaatatttatgatataatttcaaccattagatt 26055060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 49139901 - 49139964
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||  ||||||||||||||||||||  ||||||||| ||||| ||||||| |||| ||||    
T  49139901 ttttggtaatctccgttagttttttaatgtttaatattttatatattatttcaatcatttgatt 49139964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 9417142 - 9417068
Alignment:
Q  127 tggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    |||||||||||||||| |  | | || |||||  ||||||||||||||||||||||||  |||||||||| ||||    
T  9417142 tggtcccttatgtcttctaccgtcacctctttcagtcctctccgttagttttttaatgtataatatttttaatat 9417068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 29001181 - 29001115
Alignment:
Q  113 aaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||| ||||||||||||||||| || |||| |||| | | |||||||| ||||||| |||||    
T  29001181 aaaacgtctcaaattggtcccttatgtattctgtcgttacttatcttggtcctttccgttaattttt 29001115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 27690697 - 27690576
Alignment:
Q  104 cctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatataa 203  Q
    |||||||||||||||||| ||||||||  ||||||| ||||  | |||  | ||||||||||| | ||||||||||| ||   |||||||| | |||| |    
T  27690697 cctaactaaaaaacgtctcaaattggtttcttatgtattttaccgttatgtattttggtcctcacagttagttttttgattcttaatatttgtaatatga 27690598  T
Q  204 tttcaaccattcgatttcagat 225  Q
    ||  |||| ||||||| |||||    
T  27690597 ttataaccgttcgattgcagat 27690576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 9119851 - 9119911
Alignment:
Q  105 ctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcct 165  Q
    ||||||| |||  |||| || ||||||| |||||||||||||| |||| ||||||||||||    
T  9119851 ctaactataaagtgtctcaatttggtccgttatgtcttttgtcgttacctcttttggtcct 9119911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 33941420 - 33941472
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaacc 211  Q
    |||||||||| ||||||||||||||| |||| |||||| |||| |||| ||||    
T  33941420 tggtcctctctgttagttttttaatgtctaacatttttaatatgattttaacc 33941472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 34532773 - 34532713
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttgg 161  Q
    ||||||||||| |||  |||| || |||||||||||||||||||| | |||| ||||||||    
T  34532773 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttgg 34532713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 50679834 - 50679782
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaacc 211  Q
    |||||||||||||||||||||||||| ||||  ||||| ||||  ||||||||    
T  50679834 tggtcctctccgttagttttttaatgtctaaattttttgatatgttttcaacc 50679782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 51217951 - 51217991
Alignment:
Q  239 ttctcttctctcccagtacacaaaatctccaagatccaatc 279  Q
    ||||||||| ||||| ||||||||||||| |||||||||||    
T  51217951 ttctcttctatcccactacacaaaatctcgaagatccaatc 51217991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 7483116 - 7483246
Alignment:
Q  62 ttcgttggtctcttgacttaaattcttttt-tcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttg 160  Q
    |||||||||| ||| |||||| |||||||| |||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||| |||| |||||||    
T  7483116 ttcgttggtcccttaacttaa-ttctttttctcagtatggtccccta-ctaaaaaacgtctcaaattggtctcttatgtcttttgtcgttacctcttttg 7483213  T
Q  161 gtcctctccgttagttttttaatgactaatatt 193  Q
    |||||||  |||||||||||| |||||||||||    
T  7483214 gtcctctatgttagttttttattgactaatatt 7483246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 7483610 - 7483518
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |  | |||| |||||||||| |||||||||||||||    
T  7483610 ttttttcagtatggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcatctccgttagttttt 7483518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 7921697 - 7921596
Alignment:
Q  118 gtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcga 217  Q
    |||| ||||||||||||||||| || |||| |||| | ||||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  7921697 gtctcaaattggtcccttatgtattgtgtcgttacctattttgatcctctccgttagttttttaatgtctaatatttttgatatgatttcaaccattcga 7921598  T
Q  218 tt 219  Q
    ||    
T  7921597 tt 7921596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 26797367 - 26797482
Alignment:
Q  104 cctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatataa 203  Q
    |||||||||||||||||| |||||||| |||||||| || || | |||| | | |||| |||||||||||||||| |||||| |||||||||| ||||||    
T  26797367 cctaactaaaaaacgtctcaaattggttccttatgtattatgccgttacctatcttggccctctccgttagttttctaatgattaatatttttgatataa 26797466  T
Q  204 tttcaaccattcgatt 219  Q
    ||||||||||| ||||    
T  26797467 tttcaaccatttgatt 26797482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 17345410 - 17345473
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||    
T  17345410 ttttggtcctctccgttagttttttaatgtctaatatttttaatatgatttgaaccattcgatt 17345473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 53049108 - 53049032
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || ||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  53049108 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttagttt 53049032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 5416243 - 5416315
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||| |||| || |||||||||||||||||||||| |||| |||||||||||  |||||||    
T  5416243 tcccctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcccatccgtta 5416315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 53047942 - 53048014
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  53047942 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 53048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 8372632 - 8372569
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||  |||||||||||||||||||  |||||||||| |||| |||||||||||||||||    
T  8372632 ttttggtcacctccgttagttttttaatgtttaatatttttgatatgatttcaaccattcgatt 8372569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 32980468 - 32980405
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||| |||||||||||||||||||  |||| |||||| |||| |||||||||||||||||    
T  32980468 ttttggtcatctccgttagttttttaatttctaacatttttgatatgatttcaaccattcgatt 32980405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 39133062 - 39133140
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||||| |||  |||| || ||||||||||||||||| | || |||| ||||||||||||||| ||||||||||    
T  39133062 tcccctaactataaagtgtctcaatttggtcccttatgtcttctctcgttacctcttttggtcctctctgttagttttt 39133140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 32973184 - 32973260
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || ||||||||||||||||| || | |||| |||||| |||||||||||||||||    
T  32973184 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctctttttgtcctctccgttagttt 32973260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 39287519 - 39287591
Alignment:
Q  105 ctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||| |||  |||| || |||||||||||||| || |||| |||| ||||||||||||||||||||||||    
T  39287519 ctaactataaagtgtctcaatttggtcccttatgttttctgtcgttacctcttttggtcctctccgttagttt 39287591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 48035395 - 48035323
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||||||||||||| || | |||| ||||||||||||||||||||    
T  48035395 tcccctaactataaagtgtctcaatttggtcccttatgtcttatgccgttacctcttttggtcctctccgtta 48035323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 52293594 - 52293518
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || ||||||| ||||||||| | || |||| ||||||||||||||||||||||||    
T  52293594 tcccctaactataaagtgtctcaatttggtcctttatgtcttctatcgttacctcttttggtcctctccgttagttt 52293518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 55443621 - 55443549
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || |||||||||||||||||||||| |||| |||||||||||  |||||||    
T  55443621 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcccatccgtta 55443549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 43345419 - 43345482
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||  ||||||||||||||||||||  |||||||||| |||| ||| |||||||||||||    
T  43345419 ttttggttttctccgttagttttttaatgtttaatatttttgatatgattccaaccattcgatt 43345482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 11220674 - 11220616
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccatt 214  Q
    ||||||||| ||||||| ||||||||||| | ||||||| | |||||||||||||||||    
T  11220674 ttttggtcccctccgtttgttttttaatgtcaaatatttatgatataatttcaaccatt 11220616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 17350173 - 17350095
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||||| |||  |||| || ||||||||||||||||| |    |||| ||||||||||||||||||||||||||    
T  17350173 tcccctaactataaagtgtctcaatttggtcccttatgtcttctcctgttacctcttttggtcctctccgttagttttt 17350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 25585849 - 25585780
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatttcagat 225  Q
    |||| ||| |||||||||||||||||||| |||| |||| | |||| |||| |||||||||||| |||||    
T  25585849 ttttagtcatctccgttagttttttaatgtctaacatttctgatatgatttgaaccattcgattgcagat 25585780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 5417119 - 5417047
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| | ||||||||||||||||||||||  |||| |||||||||| | |||||||    
T  5417119 tcccctaactataaagtgtctcagattggtcccttatgtcttttgttgttacctcttttggtcttatccgtta 5417047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 32974294 - 32974222
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||||||||||||| || | |||| |||||||||| |||||||||    
T  32974294 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgtta 32974222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 53342761 - 53342833
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||| |||||||||||||| |||| ||||||||| || |||||||    
T  53342761 tcccctaactataaagtgtctcaatttggtccattatgtcttttgtcgttacctcttttggtactatccgtta 53342833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 11481971 - 11482018
Alignment:
Q  126 ttggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    |||||||||||||||||||| | |||| |||||||||||| |||||||    
T  11481971 ttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 11482018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 40502257 - 40502214
Alignment:
Q  130 tcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    |||||||||||||||||| |||| |||||||||||| |||||||    
T  40502257 tcccttatgtcttttgtcgttacctcttttggtcctatccgtta 40502214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 48825854 - 48825933
Alignment:
Q  98 tgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||| ||||||||| |||  |||| || ||||||||||||||||| |||| |||| || |||||| ||||| ||||||||    
T  48825854 tgattccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcatttggtactctcagttagttt 48825933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 34901697 - 34901735
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgt 139  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  34901697 tcccttaattaaaaaacgtcttaaattggtcccttatgt 34901735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 34903084 - 34902987
Alignment:
Q  82 aattcttttttcagtatgatcccctaactaaaaaa-cgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||| ||||||||  ||| |||| ||||||||||| ||| | || |||||| ||||||| || |||| |||| |||||||||| |||||||||||||||    
T  34903084 aatttttttttcaaaatggtcccttaactaaaaaaacgtttcaatttggtctcttatgttttctgtcgttac-tcttttggtcatctccgttagttttt 34902987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 53809500 - 53809446
Alignment:
Q  165 tctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||| ||||  ||||| ||||||||| ||||||| ||||    
T  53809500 tctccgttagttttttaatgtctaaattttttgatataattttaaccatttgatt 53809446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 19253018 - 19252973
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||||    
T  19253018 ttttggtcctgtccgtttattttttaatgtctaatattttttatat 19252973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 19622987 - 19622890
Alignment:
Q  104 cctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    |||||||| |||  |||| ||| |||||||||||||||| |||| |||  | |||||||| || | |||| |||||| ||| ||||||||||| ||||    
T  19622987 cctaactataaagtgtctcaaactggtcccttatgtcttctgtcgttatctattttggtcatcgcagttaattttttgatgtctaatatttttaatat 19622890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 31281074 - 31281135
Alignment:
Q  158 ttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||| ||||||||||||||||||| ||||||| ||  |||| |||||| ||||| ||||    
T  31281074 ttggtccactccgttagttttttaatgtctaatatcttaaatatgatttcagccattagatt 31281135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 40501856 - 40501925
Alignment:
Q  104 cctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    |||||||| ||||  ||| || |||||||||||||||||||| | |||| |||||||||| | |||||||    
T  40501856 cctaactataaaatatctcaatttggtcccttatgtcttttgccgttacctcttttggtcttatccgtta 40501925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 55425616 - 55425555
Alignment:
Q  158 ttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||| ||||||||||||||||||| ||||||| ||  |||| |||||| ||||| ||||    
T  55425616 ttggtccactccgttagttttttaatgtctaatatcttaaatatgatttcagccattagatt 55425555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 31638173 - 31638241
Alignment:
Q  111 aaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||||||||| |||||||| ||||||||||| |    |||| ||||||| ||||||||| ||||||||    
T  31638173 aaaaaacgtctcaaattggttccttatgtcttcttatgttacctcttttgatcctctccgctagttttt 31638241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 39288510 - 39288442
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctcc 169  Q
    ||||||||||| |||  |||| || ||||||||||||||||| |||| |||  ||||||||| ||||||    
T  39288510 tcccctaactataaagtgtctcaatttggtcccttatgtcttatgtcgttatctcttttggttctctcc 39288442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 52292639 - 52292711
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || || ||||| ||||||||||||| |||| |||||||||| | |||||||    
T  52292639 tcccctaactataaagtgtctcaatttagtcccgtatgtcttttgtcgttacctcttttggtcttatccgtta 52292711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 52705379 - 52705307
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || |||||||||||||||||||||  |||| ||||||| || | |||||||    
T  52705379 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgttgttacctcttttgatcatatccgtta 52705307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 5384362 - 5384299
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  5384362 ttttggtcctctccgttagttttttaatgtttaatatttttgatataatttcaaccattcgatt 5384299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 14212256 - 14212144
Alignment:
Q  106 taactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatataatt 205  Q
    ||||||||||| |||| |||||| |||||||||| || | || |||| | |||| ||||||| ||||| ||| |||||| |||||||||||||| |||||    
T  14212256 taactaaaaaatgtctcaaattg-tcccttatgtattatatcgttacctattttagtcctcttcgttaatttcttaatggctaatattttttatgtaatt 14212158  T
Q  206 tcaaccattcgatt 219  Q
    ||||||||||||||    
T  14212157 tcaaccattcgatt 14212144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 41905220 - 41905338
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttata 200  Q
    ||||||||||| |||| |||||||| |||||||||||||||| |  | | || ||||||| |||||||||||||||||||||||  | |||||||| |||    
T  41905220 tcccctaactataaaatgtcttaaactggtcccttatgtcttctaccgtcacctcttttgatcctctccgttagttttttaatgtatcatatttttaata 41905319  T
Q  201 taatttcaaccattcgatt 219  Q
    | |||  ||||||| ||||    
T  41905320 tgattataaccatttgatt 41905338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 1273189 - 1273252
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||| |||||||||||||||||    
T  1273189 ttttggtcccctccgttagttttttaatgtttaatatttttgatatgatttcaaccattcgatt 1273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 20991719 - 20991648
Alignment:
Q  102 cccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    |||||||||| |||| |||| || |||||||||||||||||||||| |||| |||||||||||| |||||||    
T  20991719 cccctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcctatccgtta 20991648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 4566993 - 4567072
Alignment:
Q  98 tgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||||||||||||| |||  |||| || ||||||||||||||||| |||| |||| |||||||||| |||| ||||||||    
T  4566993 tgatcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcatctctgttagttt 4567072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 15510337 - 15510258
Alignment:
Q  98 tgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||||||||||||| |||  |||| || ||||||||||||||||| || | |||| ||||||||||||||| ||||||||    
T  15510337 tgatcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctctgttagttt 15510258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 32735495 - 32735441
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaac 210  Q
    |||||||| |||| |||||| |||||||| |||||||||||||||||||||||||    
T  32735495 ttttggtcatctctgttagtattttaatgtctaatattttttatataatttcaac 32735441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 21389156 - 21389104
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaacc 211  Q
    |||||||||||||||||||||||||| |||| |||||||||||  ||||||||    
T  21389156 tggtcctctccgttagttttttaatgtctaaaattttttatatgttttcaacc 21389104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 22650699 - 22650627
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || |||||||||||||||||||| | |||| |||||||||||| |||||||    
T  22650699 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 22650627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 22812403 - 22812339
Alignment:
Q  156 ttttggtcctctccgttagtttttt-aatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||| |||||||||||||||||    
T  22812403 ttttggtcccctccgttagtttttttaatgtttaatatttttgatatgatttcaaccattcgatt 22812339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 12829601 - 12829724
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgac 186  Q
    |||||||||| || |||| ||||||| |||||||| ||||||||||||||||| || |    |||| | ||  ||||||||| |||||| |||||||  |    
T  12829601 ttttttcagtttggtcccttaactaagaaacgtctcaaattggtcccttatgtattcttctgttacttattgcggtcctctctgttagtattttaatatc 12829700  T
Q  187 taatattttttatataatttcaac 210  Q
    |||||||||| || | ||||||||    
T  12829701 taatatttttgatttgatttcaac 12829724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 15857634 - 15857575
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattc 215  Q
    |||||||| ||||||||||||||||||||  |||||||||| |||| ||| |||||||||    
T  15857634 ttttggtcatctccgttagttttttaatgtttaatatttttgatatgattccaaccattc 15857575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 10978282 - 10978229
Alignment:
Q  166 ctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||| |||||||||  |||||||||| ||||||||| ||||||||||||    
T  10978282 ctccgttagatttttaatgtttaatatttttgatataattttaaccattcgatt 10978229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 8188213 - 8188153
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||| |||| |||| | |||| |||| ||||||| ||||    
T  8188213 tggtcctctccgttagttttttaatgtctaaaatttctgatatgattttaaccatttgatt 8188153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 15509240 - 15509312
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||||||||||||| || | |||| | ||||||||||||||||||    
T  15509240 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctattttggtcctctccgtta 15509312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 20988735 - 20988811
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || || ||| |||||||||| || | |||| ||||||||||||||||||||||||    
T  20988735 tcccctaactataaagtgtctcaatttagtctcttatgtcttgtgccgttacctcttttggtcctctccgttagttt 20988811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 12861580 - 12861703
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgac 186  Q
    |||| ||||| || |||| ||||||| |||||||| ||||||||||||||||| || |    |||| | ||  ||||||||| |||||| |||||||  |    
T  12861580 ttttctcagtttggtcccttaactaagaaacgtctcaaattggtcccttatgtattcttctgttacttattgcggtcctctctgttagtattttaatatc 12861679  T
Q  187 taatattttttatataatttcaac 210  Q
    |||||||||| || | ||||||||    
T  12861680 taatatttttgatttgatttcaac 12861703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 12936118 - 12936055
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    |||||||| | |||||| |||||||||||  || ||||||||||||  ||||||||||||||||    
T  12936118 ttttggtcatttccgtttgttttttaatgtttactattttttatattgtttcaaccattcgatt 12936055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 32521993 - 32521922
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtt 172  Q
    ||||||||||| | |  |||| || |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  32521993 tcccctaactatagagtgtctcaatttggtcccttgtgtcttttgtcgttacctcttttggtcctatccgtt 32521922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 41906469 - 41906391
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    |||| |||||||||||||||| ||||||| ||||||| | || || | |||| | ||||||||| || |||||||||||    
T  41906469 tcccttaactaaaaaacgtctcaaattggccccttatatattctgccgttacctattttggtccacttcgttagttttt 41906391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 14210174 - 14210223
Alignment:
Q  87 ttttttcagtatgatcccctaactaaaaaacgtcttaaattggtccctta 136  Q
    ||||||||  ||| |||| |||||||||||||||| ||||||||||||||    
T  14210174 ttttttcacaatggtcccataactaaaaaacgtctcaaattggtccctta 14210223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 4568045 - 4567973
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||||||||||||||| || | |||| | |||||||| |||||||||    
T  4568045 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgcctttacctattttggtcatctccgtta 4567973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 18695660 - 18695608
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaacc 211  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||  ||||||||    
T  18695660 tggtcatctccgttagttttttaatgtctaaaatttttgatatgttttcaacc 18695608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 19825907 - 19825955
Alignment:
Q  89 ttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttat 137  Q
    |||||| | |||||||||||||||||||||||| ||| |||||| ||||    
T  19825907 ttttcaatttgatcccctaactaaaaaacgtctcaaactggtcctttat 19825955  T

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Target: scaffold0084 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 11776 - 11869
Alignment:
Q  126 ttggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatt 219  Q
    ||||||||||||||||| |    |||| | ||||||||||||||||||||||||||||| ||||||||||| || | |||| ||||||||||||    
T  11776 ttggtcccttatgtcttctccagttacctattttggtcctctccgttagttttttaatgtctaatatttttgatgtgattttaaccattcgatt 11869  T

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Target: scaffold0046 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 24898 - 24772
Alignment:
Q  89 ttttcagtatgatcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgacta 188  Q
    |||||||| || |||||||| || |||  || | || |||||||||||||||||    | |||| | |||||||| |||||||||||||||||||| |||    
T  24898 ttttcagtttggtcccctaattataaagtgtttcaatttggtcccttatgtcttcctccgttacctattttggtcatctccgttagttttttaatgtcta 24799  T
Q  189 atattttttatataatttcaaccattc 215  Q
    ||||||||||| | |||| ||||||||    
T  24798 atattttttatgtgattttaaccattc 24772  T

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Target: scaffold0024 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 73035 - 72978
Alignment:
Q  123 aaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagtttttt 180  Q
    ||||||||| |||||||||| |||| |||| |||||||||||||||||||||||||||    
T  73035 aaattggtctcttatgtcttctgtcgttacctcttttggtcctctccgttagtttttt 72978  T

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Target: scaffold0177 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 1800 - 1876
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||||||| || |||  |||| || ||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  1800 tcccctaattataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttagttt 1876  T

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Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 207866 - 207791
Alignment:
Q  104 cctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttt 179  Q
    ||||| |||||||||||| |||||| ||||||||||||| |  | |||  ||||||||||||||||||||||||||    
T  207866 cctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgttagttttt 207791  T

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Target: scaffold0290 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 8424 - 8542
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttata 200  Q
    ||||||||||| |||  |||| ||||||||||| ||  ||||  ||||||   | ||| |||| ||||||||||||||||||||  ||| |||| | |||    
T  8424 tcccctaactataaactgtctcaaattggtcccataaatcttcagtcatttactatttcggtcatctccgttagttttttaatgtgtaacatttctgata 8523  T
Q  201 taatttcaaccattcgatt 219  Q
    |||||||||||||||||||    
T  8524 taatttcaaccattcgatt 8542  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 18773699 - 18773817
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttata 200  Q
    |||||||| || |||| |||| || ||||||||||||||| | |    |||| | ||||||||||||| ||||||||||||||| || || ||||| |||    
T  18773699 tcccctaattataaaatgtctcaatttggtcccttatgtcctctcgtgttaccttttttggtcctctctgttagttttttaatgtctgatgtttttgata 18773798  T
Q  201 taatttcaaccattcgatt 219  Q
    | |||| ||||||||||||    
T  18773799 tgattttaaccattcgatt 18773817  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 2138708 - 2138632
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||||||| |||  |||| || || |||||||||||||| |||| |||| ||||||||||||||| ||||||||    
T  2138708 tcccctaactataaagtgtctcaatttagtcccttatgtcttctgtcgttacctcttttggtcctctctgttagttt 2138632  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 8447266 - 8447338
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || |||||||||||||||||||| | |||| |||||||||||| |||||||    
T  8447266 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 8447338  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 8456070 - 8456142
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || |||||||||||||||||||| | |||| |||||||||||| |||||||    
T  8456070 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 8456142  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 28225469 - 28225532
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcc 164  Q
    ||||||||||| |||  |||| || |||||||||||||||||||||| ||| ||||||||||||    
T  28225469 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttatatcttttggtcc 28225532  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 19368585 - 19368513
Alignment:
Q  105 ctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    ||||||| |||  |||| || |||||| |||||||||| |||| |||| |||||| |||||||||||||||||    
T  19368585 ctaactataaagtgtctcaatttggtctcttatgtcttctgtcgttacctcttttagtcctctccgttagttt 19368513  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 13176404 - 13176342
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtc 163  Q
    ||||||||||| |||| |||| || ||||||  |||||||||||||| |||| ||||||||||    
T  13176404 tcccctaactataaaatgtctcaatttggtcttttatgtcttttgtcgttacctcttttggtc 13176342  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 13279402 - 13279511
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttata 200  Q
    |||| ||||||| ||  |||| ||| ||||||||||||| || | |||| |  | ||| |||| |||| ||||||||||||||| ||||| |||||||||    
T  13279402 tcccttaactaagaattgtctcaaactggtcccttatgtattctttcatgatctatttcggtcatctctgttagttttttaatgtctaat-ttttttata 13279500  T
Q  201 taatttcaacc 211  Q
    | |||||||||    
T  13279501 tgatttcaacc 13279511  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 31740288 - 31740247
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatatttttt 197  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
T  31740288 ttttggtcctatccgtttgttttttaatgtctaatatttttt 31740247  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 33807789 - 33807834
Alignment:
Q  156 ttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    |||||||||||||||||| |||||||||| || |||||||| ||||    
T  33807789 ttttggtcctctccgttaattttttaatgtctgatatttttcatat 33807834  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 19367762 - 19367834
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || |||||||||||||||||||||  |||| | |||||||| | |||||||    
T  19367762 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgttgttaccttttttggtcatatccgtta 19367834  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 26584108 - 26584036
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgtta 173  Q
    ||||||||||| |||  |||| || ||||| |||||||||||||| | |||| |||||||||| | |||||||    
T  26584108 tcccctaactataaagtgtctcaatttggttccttatgtcttttgccgttacctcttttggtcgtatccgtta 26584036  T

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Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 25967 - 26030
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcc 164  Q
    ||||||||||| |||  |||| || |||||||||||||||||||||| ||| ||||||||||||    
T  25967 tcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttatatcttttggtcc 26030  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 458531 - 458455
Alignment:
Q  101 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcattacatcttttggtcctctccgttagttt 177  Q
    |||||||| || |||  ||||||| ||||||||||||||||| ||   |||  ||||||||||||||||||||||||    
T  458531 tcccctaattataaagtgtcttaatttggtcccttatgtcttctgctgttatctcttttggtcctctccgttagttt 458455  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 75823 - 75890
Alignment:
Q  134 ttatgtcttttgtcattacatcttttggtcctctccgttagttttttaatgactaatattttttatat 201  Q
    |||||||||||||| |||  | ||||||||||| | ||||||||||| ||| ||||||||||| ||||    
T  75823 ttatgtcttttgtcgttatctattttggtcctcgcagttagttttttgatgtctaatatttttaatat 75890  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 54694 - 54761
Alignment:
Q  159 tggtcctctccgttagttttttaatgactaatattttttatataatttcaaccattcgatttcagatt 226  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| |||  |||| || |||| ||||||    
T  54694 tggtcctctccgttagttttttgatgtctaatatttttaatatgattataaccgtttgattgcagatt 54761  T

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Target: scaffold0687 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 6577 - 6516
Alignment:
Q  159 tggtcctctccgttagttttttaatgact-aatattttttatataatttcaaccattcgatt 219  Q
    |||||||||||||||||||||||||| || ||| |||||||| | |||| ||||||| ||||    
T  6577 tggtcctctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgatt 6516  T

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