View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_21 (Length: 379)
Name: NF3941_low_21
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_21 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 6169777 - 6170136
Alignment:
| Q |
17 |
agaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaacataggattttctgcaatgtcaatag |
116 |
Q |
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| T |
6169777 |
agaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaacataggattttctgcaatgtcaatag |
6169876 |
T |
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| Q |
117 |
cctcatttgtcccgttggtgttttcaaatcgaccaacgtaacgtgtacactttcatccattcgtcgacaacttttgttccaaaaaaggatgagggtttct |
216 |
Q |
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| T |
6169877 |
cttcatttgtcccgttggtgttttcaaatcgaccaatgtaacgtgtacactttcatgcattcgtcgacaacttttgttccaaaaaaggatgagggttt-- |
6169974 |
T |
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| Q |
217 |
actactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatca |
316 |
Q |
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| T |
6169975 |
-ctactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatccatttatcaatacttgatca |
6170073 |
T |
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| Q |
317 |
ccaatattcnnnnnnncaacatcaccaacaacaatctcaaagaacgatatcttttggcggtta |
379 |
Q |
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| T |
6170074 |
ccaatattcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttggcagtta |
6170136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 357
Target Start/End: Original strand, 6186927 - 6187060
Alignment:
| Q |
224 |
atctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatcaccaatat |
323 |
Q |
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| T |
6186927 |
atctctacatgatcactctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatct |
6187026 |
T |
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| Q |
324 |
tcnnnnnnncaacatcaccaacaacaatctcaaa |
357 |
Q |
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| T |
6187027 |
tcaaacaaacaacatcaccaacaacaatatcaaa |
6187060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 4243869 - 4243932
Alignment:
| Q |
222 |
taatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatc |
285 |
Q |
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| T |
4243869 |
taatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatc |
4243932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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