View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_22 (Length: 372)
Name: NF3941_low_22
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 45271456 - 45271109
Alignment:
| Q |
6 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45271456 |
gtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcacagccgttgcccttgacattgtgactggtttgtctgacat |
45271357 |
T |
|
| Q |
106 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45271356 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatc |
45271257 |
T |
|
| Q |
206 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
45271256 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaat |
45271157 |
T |
|
| Q |
306 |
ttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaag |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271156 |
ttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaag |
45271109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 45283230 - 45282880
Alignment:
| Q |
6 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
45283230 |
gtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacat |
45283131 |
T |
|
| Q |
106 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
205 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45283130 |
cctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatc |
45283031 |
T |
|
| Q |
206 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaat |
305 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
45283030 |
tcttcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattatgcctaatgctgttgttgccaaggatggtagcggccaat |
45282931 |
T |
|
| Q |
306 |
ttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggca |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282930 |
ttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggca |
45282880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 45274989 - 45274639
Alignment:
| Q |
6 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
105 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
45274989 |
gtgagaagaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaagatcaccgcggttgcccttgacattgtgactggtttgtccgacat |
45274890 |
T |
|
| Q |
106 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
205 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45274889 |
cctccagcaattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatc |
45274790 |
T |
|
| Q |
206 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaat |
305 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
45274789 |
tctgcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaat |
45274690 |
T |
|
| Q |
306 |
ttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggca |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45274689 |
ttaaaaccatccaggctgctcttgcctcttatcctaagggaaacaaaggca |
45274639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 45294618 - 45294268
Alignment:
| Q |
6 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
105 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
45294618 |
gtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacat |
45294519 |
T |
|
| Q |
106 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
205 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45294518 |
cctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
45294419 |
T |
|
| Q |
206 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaat |
305 |
Q |
| |
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||| |||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| |||||||||||||||||||||||| |||| |
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| T |
45294418 |
tctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaat |
45294319 |
T |
|
| Q |
306 |
ttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggca |
356 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
45294318 |
ttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggca |
45294268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 45303578 - 45303228
Alignment:
| Q |
6 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
105 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
45303578 |
gtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacat |
45303479 |
T |
|
| Q |
106 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
205 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45303478 |
cctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
45303379 |
T |
|
| Q |
206 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaat |
305 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| |||||||||||||||||||||||| |||| |
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|
| T |
45303378 |
tctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaat |
45303279 |
T |
|
| Q |
306 |
ttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggca |
356 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
45303278 |
ttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggca |
45303228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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