View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3941_low_23 (Length: 361)
Name: NF3941_low_23
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_23 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 49352870 - 49352536
Alignment:
| Q |
17 |
acaatgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctcgta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49352870 |
acaatgaaagatcatgcaccaaatcatgcaatttaaaaccacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctcgta |
49352771 |
T |
|
| Q |
117 |
cacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaa |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49352770 |
cacaaactgaatgttcatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaa |
49352671 |
T |
|
| Q |
217 |
tcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatctt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49352670 |
tcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatctt |
49352571 |
T |
|
| Q |
317 |
ctttttgtggtaaattccaaatctcactgtctctg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
49352570 |
ctttttgtggtaaattccaaatctcactgtctctg |
49352536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 49341492 - 49341164
Alignment:
| Q |
17 |
acaatgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctcgta |
116 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||| |
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|
| T |
49341492 |
acaatgagagatcatgcactaaatcatgcaatttaaatccacaaaaaccaccaccaaagtctacaaaatcttgaataaatgatctagactgaaggtcgta |
49341393 |
T |
|
| Q |
117 |
cacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaa |
216 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||| |
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|
| T |
49341392 |
cagaaactgaatgctaatatcttccaaggttttacccatgtttggtggtggaagaaaaccaaatgccacccatagcacactaacatcaaaattaataaat |
49341293 |
T |
|
| Q |
217 |
tcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatctt |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||| || | |
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|
| T |
49341292 |
ggaaagtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataactt--tttgatagcagacaaaatgtcgtcat |
49341195 |
T |
|
| Q |
317 |
ctttttgtggtaaattccaaatctcactgtc |
347 |
Q |
| |
|
||||||||||||||| |||||| |||||||| |
|
|
| T |
49341194 |
ctttttgtggtaaatcccaaatttcactgtc |
49341164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 19030829 - 19030639
Alignment:
| Q |
17 |
acaatgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctcgta |
116 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||| | ||| ||||| || || |||||| |||| ||||| |||||| |||||||| ||| |||||| | |
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|
| T |
19030829 |
acaatgcaagatcgtgcactaaatcatgcaagttaaagtaacaacaaacatcaccaatgtcttcaaaatcttgaaggaatgatcttgaccaaagctcatg |
19030730 |
T |
|
| Q |
117 |
cacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaa |
207 |
Q |
| |
|
|| |||||||||| |||||||| ||||||||||||| || ||||| | |||||||||||||||||| |||||| |||| |||||||||| |
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|
| T |
19030729 |
cagaaactgaatgctaatatctaccaaggttttacctctgtttggttgtggaagaaaaccaagtgcctcccataacacatgaacatgaaaa |
19030639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 24 - 351
Target Start/End: Original strand, 32783406 - 32783733
Alignment:
| Q |
24 |
aagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctcgtacacaaac |
123 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||| ||||| ||||||||||||||| ||| |||||| | || ||| |
|
|
| T |
32783406 |
aagatcatgcactaaatcatgcaatttaaatgtacaaataccaccaccaaagtctacaaaatcttgaagaaatgatcttgaccaaagctcttgcagtaac |
32783505 |
T |
|
| Q |
124 |
tgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagt |
223 |
Q |
| |
|
|||||| || || ||||||||||||||||||| |||||||| |||||| |||||| || |||| |||| ||||||| | ||||| ||| ||||| |
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|
| T |
32783506 |
tgaatgctagtaccttccaaggttttacccctgtttggtggcagaagaacaccaagcacctcccaaagcatcctaacatccatattagtaaatgtaaagt |
32783605 |
T |
|
| Q |
224 |
tcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttg |
323 |
Q |
| |
|
||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
32783606 |
ccttttgaaagagggagaagcaagtaaaacatcgttttaaataagaaggtaactgatcgtaacttaatttgatagcaggcaaaatgtcatcttctttttg |
32783705 |
T |
|
| Q |
324 |
tggtaaattccaaatctcactgtctctg |
351 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
32783706 |
aggtaaattccaaatttcactgtctctg |
32783733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 135 - 347
Target Start/End: Complemental strand, 29751144 - 29750932
Alignment:
| Q |
135 |
atcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaag |
234 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||| |||| ||| |||| |||||| | ||| | ||||| ||| | |||| ||| ||||| |
|
|
| T |
29751144 |
atcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagaataattactaaagtggaagtcttttacaaag |
29751045 |
T |
|
| Q |
235 |
agagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcc |
334 |
Q |
| |
|
|| |||||||| ||||||||| |||||||||| || ||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29751044 |
agggagaagcaggcaaaacatcgttttaaatatgagggtaattgatcaaaacttaatttgagagcaggcaaaatatcatcttctttttgtggtaaattcc |
29750945 |
T |
|
| Q |
335 |
aaatctcactgtc |
347 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29750944 |
aaatctcattgtc |
29750932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 135 - 347
Target Start/End: Original strand, 29602150 - 29602362
Alignment:
| Q |
135 |
atcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaag |
234 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||| |||| ||| |||| |||||| | ||| | || || ||| | |||| ||||| ||| |
|
|
| T |
29602150 |
atcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagtataagtaacaaatttgaagtctttttcgaag |
29602249 |
T |
|
| Q |
235 |
agagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcc |
334 |
Q |
| |
|
|| |||||||| ||||||||| ||||||||||||| ||||| |||||| |||||||||||| | |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29602250 |
agggagaagcaggcaaaacatcgttttaaataagatggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttctttttgtggtaaattcc |
29602349 |
T |
|
| Q |
335 |
aaatctcactgtc |
347 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29602350 |
aaatctcattgtc |
29602362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 347
Target Start/End: Complemental strand, 29744111 - 29743899
Alignment:
| Q |
135 |
atcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaag |
234 |
Q |
| |
|
||||||||||||||||||| | |||||| || |||| | |||| ||| |||| |||||| | |||||| |||| ||| |||||| ||| ||||| |
|
|
| T |
29744111 |
atcttccaaggttttacccttgtttggtgatgggagaagatcaagagcctcccaaagcacagtgacatgattattactaaatacaaagtcttttacaaag |
29744012 |
T |
|
| Q |
235 |
agagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcc |
334 |
Q |
| |
|
|| |||||||| ||||||||| |||| |||||||| ||||| |||||| |||||||||||| | |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
29744011 |
agggagaagcaggcaaaacatcgtttcaaataagacggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttttttttgtggtaaattcc |
29743912 |
T |
|
| Q |
335 |
aaatctcactgtc |
347 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29743911 |
aaatctcattgtc |
29743899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 226 - 347
Target Start/End: Complemental strand, 35158171 - 35158050
Alignment:
| Q |
226 |
ttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtg |
325 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | || |||||||| || |||||||| | |
|
|
| T |
35158171 |
ttttcaaagagggagaagcaagcaaaacactgttttaaataagaaggtaattgatcataacttaatttgattgctggtaaaatgtcctcgtctttttgcg |
35158072 |
T |
|
| Q |
326 |
gtaaattccaaatctcactgtc |
347 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
35158071 |
gtaaattccaaatctcattgtc |
35158050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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