View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_27 (Length: 345)
Name: NF3941_low_27
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 13501098 - 13500778
Alignment:
| Q |
13 |
catcatttcacgtaggctaaggttaacctcttcaatcctaaaaccctctcattttcaatctccatcatcttcaaccaaccctcaatttccaatctttgaa |
112 |
Q |
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| T |
13501098 |
catcatttcccgtaggttaaggttaacctcttcaatcctaaaaccctctcattttcaatctccatcatcttcaaccaaccctcaatttccaatctttgaa |
13500999 |
T |
|
| Q |
113 |
cccttatctcacaacccatcttcttccttttctacctttccacacnnnnnnnctcaatcaacaaaacccactttctcatcacacaaagtttcaaatttta |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13500998 |
cccttatcccacaacccatcttcttccttttctacctttccacactttttttctcaatcaacaaaacccactttatcatcacacaaagtttcaaatttta |
13500899 |
T |
|
| Q |
213 |
gcaacccttttgctcaattcacaaaacccaggtttttctcaaccaatgatccat------catcatcatcatctgattctgagaaagagaaagagaaaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13500898 |
gcaacccttttgctcaattcacaaaacccaggtttttctcaaccaatgatccatcatcaccatcatcatcatctgattctgagaaagagaaagagaaaga |
13500799 |
T |
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| Q |
307 |
ctcaagcccatacccaggtga |
327 |
Q |
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|||||||||||||||| |||| |
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| T |
13500798 |
ctcaagcccatacccaagtga |
13500778 |
T |
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