View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3941_low_28 (Length: 342)
Name: NF3941_low_28
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_28 |
 | |
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| [»] scaffold0013 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 13948856 - 13949178
Alignment:
| Q |
17 |
agaaacgtgacctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaacttcatccaatagttgttgaacttggaagagagaagaatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
13948856 |
agaaacgtgacctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaacttcatccaatagttattgaacttggaagagagaagaattt |
13948955 |
T |
|
| Q |
117 |
gagaagccgtgtaacattacctaattcatagatgttttccctactgag----cgacatatttcatggttttggaatcaacttcaaagtcgatattgtcga |
212 |
Q |
| |
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||||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
13948956 |
gagaagcagtataacattacctaattcaaagatgttttccctactgagtaaacgacatattttatggttttggaatcaacttcaaagtcgatattgtcga |
13949055 |
T |
|
| Q |
213 |
gttgcatgtcacacacccattgcaaggcttgatagagacccaaagcctcgccaatatcaaccgagtaaaaaccaacaaagttgattgttctggccagtgc |
312 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13949056 |
gttgcatgtcacacacccattgcaaggcttgatagagacccaaagtctcgccaatatcaaccgagtaaaaaccaacaaagttgattgttctggccagtgc |
13949155 |
T |
|
| Q |
313 |
aaacgcataccaccttcatctca |
335 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
13949156 |
aaacgcataccaccttcatctca |
13949178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 172 - 306
Target Start/End: Original strand, 3051153 - 3051291
Alignment:
| Q |
172 |
tttcatggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcacacacccattgcaaggcttgata----gagacccaaagcctcgccaat |
267 |
Q |
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|||| ||||||||||||||| ||||||||||||||| ||| |||||||||||| | |||||| |||||| ||||| |||||||||||||||| |||| |
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| T |
3051153 |
tttcgtggttttggaatcaatttcaaagtcgatattatcgggttgcatgtcactcgcccattacaaggcgtgatagatagagacccaaagcctcgtcaat |
3051252 |
T |
|
| Q |
268 |
atcaaccgagtaaaaaccaacaaagttgattgttctggc |
306 |
Q |
| |
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||||| |||||||| ||||||||||||||||||| |||| |
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|
| T |
3051253 |
atcaatcgagtaaacaccaacaaagttgattgttttggc |
3051291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 308
Target Start/End: Original strand, 27393215 - 27393342
Alignment:
| Q |
180 |
ttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcacacacccattgcaaggcttgatagagacccaaagcctcgccaatatcaaccgagta |
279 |
Q |
| |
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||||| ||||||||||||| ||||||||||| || |||||||| ||||||||||||| | |||||||||||||| || |||||||||||||||| ||| |
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| T |
27393215 |
ttttgaaatcaacttcaaaatcgatattgtctggt-gcatgtcaatcacccattgcaagacgtgatagagacccaaggcttcgccaatatcaaccgggta |
27393313 |
T |
|
| Q |
280 |
aaaaccaacaaagttgattgttctggcca |
308 |
Q |
| |
|
|| |||||||||| |||||||| |||||| |
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|
| T |
27393314 |
aacaccaacaaagctgattgttttggcca |
27393342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 309
Target Start/End: Complemental strand, 40299806 - 40299677
Alignment:
| Q |
180 |
ttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcacacacccattgcaaggcttgatagagacccaaagcctcgccaatatcaaccgagta |
279 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||||||||| |||||||||| |||| |||||||||||||| || ||||||||||||| ||||| |
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|
| T |
40299806 |
ttttggaatcaatttcaaaaccaatattgtcgagttgcatgtcactcacccattgctaggcgtgatagagacccaaggcttcgccaatatcaattgagta |
40299707 |
T |
|
| Q |
280 |
aaaaccaacaaagttgattgttctggccag |
309 |
Q |
| |
|
| |||||||||||||| || ||||||| |
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| T |
40299706 |
agcgacaacaaagttgattattttggccag |
40299677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 40299956 - 40299890
Alignment:
| Q |
36 |
cgagagtatgagaaactacatttgcttgtctcctaacaaacttcatccaatagttgttgaacttgga |
102 |
Q |
| |
|
|||||||||||| ||| || |||||||||| ||||||||||| || || | |||||||||||||||| |
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|
| T |
40299956 |
cgagagtatgagcaaccacgtttgcttgtcgcctaacaaactccacccgagagttgttgaacttgga |
40299890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 334
Target Start/End: Complemental strand, 42080526 - 42080217
Alignment:
| Q |
28 |
ctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaacttcatccaatagttgttgaacttggaagagagaagaatctgagaagccgtg |
127 |
Q |
| |
|
||||| ||| |||||||||| || |||||||||||||||||| |||||| || || | ||||||||||||||||||||||||||| | | |||||| | |
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| T |
42080526 |
ctctcctgcaagagtatgagcaatcacatttgcttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaaccgg-gaagccatt |
42080428 |
T |
|
| Q |
128 |
-taacattacctaattcatagatgttttccctac-tgagcga----catatttcatggttttggaatcaacttcaaagtcgatattgtcgagttgcatgt |
221 |
Q |
| |
|
||| ||||||||||||| |||||| |||||||| |||| | || |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42080427 |
ataatattacctaattcagagatgtcttccctacctgagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgt |
42080328 |
T |
|
| Q |
222 |
cacacacccattgcaaggcttgatagagacccaaagcctcgccaatatcaaccgagtaaaaaccaacaaagttgattgttctggccagtgcaaacgcata |
321 |
Q |
| |
|
| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||| |||| || | |
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| T |
42080327 |
cgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaa--caca |
42080230 |
T |
|
| Q |
322 |
ccaccttcatctc |
334 |
Q |
| |
|
||||||||||||| |
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|
| T |
42080229 |
ccaccttcatctc |
42080217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 27 - 309
Target Start/End: Original strand, 17392068 - 17392353
Alignment:
| Q |
27 |
cctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaacttcatccaatagttgttgaacttggaagagagaagaatctgagaagccgt |
126 |
Q |
| |
|
|||||| ||||||| |||||| ||| |||||||||| ||||||| |||||||| || ||||||||||||| |||||||||||||| | | |||| || |
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|
| T |
17392068 |
cctctcctgcgagactatgagcaaccacatttgcttatctcctagaaaacttcacccgatagttgttgaacctggaagagagaagatttcgggaagttgt |
17392167 |
T |
|
| Q |
127 |
gtaacat-tacctaattcatagatgttttccctac-tgag----cgacatatttcatggtttt-ggaatcaacttcaaagtcgatattgtcgagttgcat |
219 |
Q |
| |
|
| || ||||||||||| |||| | |||||||| |||| |||| | ||| |||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
17392168 |
g----atgtacctaattcagagatttcttccctacctgagtaaacgacctcttttcgggtttttggaatcaacttcaaagtcgatattgtcgagttgcat |
17392263 |
T |
|
| Q |
220 |
gtcacacacccattgcaaggcttgatagagacccaaagcctcgccaatatcaaccgagtaaaaaccaacaaagttgattgttctggccag |
309 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||| |||| |||||||| ||||||| |
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|
| T |
17392264 |
gtcactcaaccattgcaaggcgtgatagagacccaaagcttcaccaatatcaaccgattaaacaccaataaagctgattgttttggccag |
17392353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 44022 - 43930
Alignment:
| Q |
180 |
ttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcacacacccattgcaaggcttgatagagacccaaagcctcgccaatatcaa |
272 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
44022 |
ttttgcaatcaacttcaaaatcgatattgtcgagttgcatgtcactcatccattgcaaggcgtgatagagacccaaagcttcgccaatatcaa |
43930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 73405 - 73607
Alignment:
| Q |
17 |
agaaacgtgacctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaacttcatccaatagttgttgaacttggaagagagaagaatct |
116 |
Q |
| |
|
||||||||| ||||| |||||| |||| || ||| ||||||||||||||| || |||||| || || | ||||||||||||||||||||||||||| | |
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|
| T |
73405 |
agaaacgtggtctctcctgcgagtgtatcagcaaccacatttgcttgtctcttagcaaactccacccgagagttgttgaacttggaagagagaagaaccc |
73504 |
T |
|
| Q |
117 |
gagaagccgtg-taacattacctaattcatagatgttttccctac-----tgagcgacatatttcatggttttggaatcaacttcaaagtcgatattgtc |
210 |
Q |
| |
|
||||||||||| ||| ||| ||||||||| |||||| |||||| | | | | ||| |||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
73505 |
gagaagccgtgataatatttcctaattcagagatgtcttcccttcctgggtaaatggcatctttcgtggttttggaatcaacttcaaagttgatattgtc |
73604 |
T |
|
| Q |
211 |
gag |
213 |
Q |
| |
|
||| |
|
|
| T |
73605 |
gag |
73607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 34696170 - 34696313
Alignment:
| Q |
17 |
agaaacgtgacctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaacttcatccaatagttgttgaacttggaagagagaagaatct |
116 |
Q |
| |
|
||||||||| ||||| | |||||||||||| ||| |||||| ||||||||||| |||||| || || | ||||||||||||||||||||||||||||| |
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|
| T |
34696170 |
agaaacgtggtctctccttcgagagtatgagcaaccacattttcttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaatcc |
34696269 |
T |
|
| Q |
117 |
gagaagccgtg-taacattacctaattcatagatgttttcccta |
159 |
Q |
| |
|
| ||||||||| ||| ||||| |||| | |||||| ||||||| |
|
|
| T |
34696270 |
gggaagccgtgataatattacataataaagagatgtcttcccta |
34696313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 2002615 - 2002664
Alignment:
| Q |
28 |
ctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaact |
77 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
2002615 |
ctctcatgcgagagtatgagcaaccacatttgcttgtctcctgacaaact |
2002664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 30981299 - 30981239
Alignment:
| Q |
17 |
agaaacgtgacctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaact |
77 |
Q |
| |
|
||||| ||||||| || |||||||||||||| ||| |||||| ||||||||||||||||| |
|
|
| T |
30981299 |
agaaatgtgacctttcctgcgagagtatgagcaaccacatttatttgtctcctaacaaact |
30981239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 49746142 - 49746199
Alignment:
| Q |
180 |
ttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcacacacccattgcaa |
237 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
49746142 |
tttttgaatcaacttcaaaatcgatattgtcaagttgcagatcactaacccattgcaa |
49746199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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