View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_29 (Length: 336)
Name: NF3941_low_29
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 3219329 - 3219019
Alignment:
| Q |
16 |
aggtagatactgtgtatttggatcatattgtatgaagttgacaaagtgaatgtttttaagcaggttcttattattgatcatgcagatgtaatggcaatgc |
115 |
Q |
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| T |
3219329 |
aggtagatactgtgtatttggatcatattgtatgaagttgacaaagtgaatgtttttaagcaggttcttattattgatcatgcagatgtaatggcaatgc |
3219230 |
T |
|
| Q |
116 |
aggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagtcctgtttctcattattgttgaaccttgtcagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219229 |
aggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagtcctgtttctcattattgttgaaccttgtcagaa |
3219130 |
T |
|
| Q |
216 |
ttggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgccgcccagaacagatgttatgcgcattagaccatggtatattctattt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3219129 |
ttggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgctgcccagaacagatgttatgcgcattagacgatggtatattctattt |
3219030 |
T |
|
| Q |
316 |
gccttttcttc |
326 |
Q |
| |
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||||||||||| |
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| T |
3219029 |
gccttttcttc |
3219019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 15986356 - 15986661
Alignment:
| Q |
20 |
agatactgtgtatttggatcatattgtatgaagttgacaaagtgaatgtttttaagcaggttcttattattgatcatgcagatgtaatggcaatgcaggt |
119 |
Q |
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|||| ||||||||||||||||||| ||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15986356 |
agatgctgtgtatttggatcatatcgtacgaagttgacagagtgtatgttttgaagcaggttcttattattgatcatgcagatgtaatgacaatgcaggt |
15986455 |
T |
|
| Q |
120 |
tagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagtcctgtttctcattattgttgaaccttgtcagaattgg |
219 |
Q |
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||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |
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| T |
15986456 |
tagcattctttgtttaaattattgcagaaaattgactttacccatgatttgaactacagtag-ccagtttctcattattgttgaaacttgtcagaattgg |
15986554 |
T |
|
| Q |
220 |
tctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgccgcccagaacagatgttatgcgcattagaccatggtatattctatttgcct |
319 |
Q |
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|||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15986555 |
tctcatgtgcgtccagttattgaacacttgaaccgcttaccatctacgccgcccagaacagatgttatgcgcattagaccatggtatattctatttggct |
15986654 |
T |
|
| Q |
320 |
tttcttc |
326 |
Q |
| |
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||||||| |
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| T |
15986655 |
tttcttc |
15986661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 51 - 254
Target Start/End: Complemental strand, 23727603 - 23727396
Alignment:
| Q |
51 |
agttgacaaagtgaatgt-ttttaagcaggttcttattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaa |
149 |
Q |
| |
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|||||||| |||| |||| |||||| ||| |||| ||||||||||| |||||| |||| |||||||||||| | ||| | ||||||||||||||||| || |
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| T |
23727603 |
agttgacagagtgtatgtcttttaaccagattctcattattgatcacgcagatataatagcaatgcaggtttgtattatatgtttaaattattgcaacaa |
23727504 |
T |
|
| Q |
150 |
attgacttttcccatgatttgaactac---agtagtcctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacac |
246 |
Q |
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||||||||| |||||||||||||| || | | | |||||||||||||||||||| |||||||| ||||||||||||| |||| ||||| |||| |
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| T |
23727503 |
attgactttacccatgatttgaacgacgctatgaattgtgtttctcattattgttgaaacttgtcaggattggtctcatgttaataccattattcaacag |
23727404 |
T |
|
| Q |
247 |
ttaaaccg |
254 |
Q |
| |
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|||||||| |
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|
| T |
23727403 |
ttaaaccg |
23727396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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