View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_3 (Length: 578)
Name: NF3941_low_3
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 283 - 498
Target Start/End: Complemental strand, 35233707 - 35233492
Alignment:
| Q |
283 |
agatttcatcgtttatgtgaaatacatttcttaagcgtcaacccacacgacttccacctagctagagagtgaatgttagagattgtgtgaacaagaagtt |
382 |
Q |
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| T |
35233707 |
agatttcatcgtttatgtgaaatatatttcttaagtgtgaacccacacgacttccacctagttagagagtgaatgttagagattgtgtgaacaagaagtt |
35233608 |
T |
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| Q |
383 |
gatatgaccgaaaagaattatctcttgttgattttggccaaaccactagactatatgtgctaatagtaccgtactgctataagaaaaatgatatttgcac |
482 |
Q |
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| T |
35233607 |
gatatgatggaaaaggattatctcctgttgatttcggccaaaccactagactatatgtgctaatagtaccgtactgctataagaaaaatgatatttgcac |
35233508 |
T |
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| Q |
483 |
aaccattttacgataa |
498 |
Q |
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| T |
35233507 |
aaccattttacgataa |
35233492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 35233878 - 35233751
Alignment:
| Q |
127 |
caatttcttacacttattcattcaaatgaaacaaataaaatacgaatattgaccatctaaaaacaactcttatcttttcttttactttggtgtctaatca |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35233878 |
caatttcttacacttattcattcaaatgaaacaaataaaatacgaatattgaccatctaaaaacaactcttatcttttcttttactttggtgtctaatca |
35233779 |
T |
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| Q |
227 |
tcaaatttcaatcaataaaaaatgttag |
254 |
Q |
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| T |
35233778 |
tcaaatttcaatcaataaaaaatgttag |
35233751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 35233965 - 35233922
Alignment:
| Q |
21 |
agccgtttttcgagaatatatcatcattattcagtattatacat |
64 |
Q |
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| T |
35233965 |
agccgtttttcgagaatatatcatcattattcagtattatacat |
35233922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 491
Target Start/End: Complemental strand, 16829729 - 16829701
Alignment:
| Q |
463 |
aagaaaaatgatatttgcacaaccatttt |
491 |
Q |
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| T |
16829729 |
aagaaaaatgatatttgcacaaccatttt |
16829701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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