View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3941_low_31 (Length: 327)

Name: NF3941_low_31
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3941_low_31
NF3941_low_31
[»] chr2 (2 HSPs)
chr2 (3-314)||(43851570-43851882)
chr2 (220-278)||(41383017-41383075)
[»] chr6 (4 HSPs)
chr6 (190-278)||(7980036-7980124)
chr6 (216-278)||(7972991-7973053)
chr6 (216-278)||(8040988-8041050)
chr6 (216-278)||(8031620-8031682)
[»] chr7 (1 HSPs)
chr7 (178-278)||(14199157-14199257)
[»] chr3 (2 HSPs)
chr3 (176-292)||(38827942-38828058)
chr3 (223-279)||(361786-361842)
[»] scaffold0531 (1 HSPs)
scaffold0531 (216-278)||(3984-4046)
[»] chr8 (1 HSPs)
chr8 (181-269)||(34408878-34408966)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 314
Target Start/End: Original strand, 43851570 - 43851882
Alignment:
Q  3 aaatgaaaaaccaattgcttcttcagaggctgaaaaggtctctttctcagcacaagaaccagttgagaacacttgttattatgtcttgtatttatttgta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43851570 aaatgaaaaaccaattgcttcttcagaggctgaaaaggtctctttctcagcacaagaaccagttgagaacacttgttattatgtcttgtatttatttgta 43851669  T
Q  103 tgaaaaataaataaaaatctagttctgatatattgtgtacnnnnnnnnn-aacagatagataaaagaacagctgaacaaaaggcaatagatgattggctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43851670 tgaaaaataaataaaaatctagttctgatatattgtgtacttttttttttaacagatagataaaagaacagctgaacaaaaggcaatagatgattggctt 43851769  T
Q  202 cccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgtcttgagtcttccatctgccatgg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43851770 cccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgtcttgagtcttccatctgccatgg 43851869  T
Q  302 caagtctttgatg 314  Q
    |||||||| ||||    
T  43851870 caagtcttggatg 43851882  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 41383075 - 41383017
Alignment:
Q  220 aatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgt 278  Q
    |||||||||||||||||| |  |||| |||||||| |||||||||||||||||||||||    
T  41383075 aatgcaaaatggtggtactctactttccacaatgtcactgccatggttggagctggtgt 41383017  T

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Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 7980124 - 7980036
Alignment:
Q  190 gatgattggcttcccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgt 278  Q
    ||||| |||||||| || || |||  |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  7980124 gatgagtggcttccaattacatctaaaaggaatgcaaaatggtggtactcagcttttcacaatgtcactgccatggttggagctggtgt 7980036  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 7973053 - 7972991
Alignment:
Q  216 aaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgt 278  Q
    |||||||||||||||||||||| |  |||| |||||||| |||||||||||||||||||||||    
T  7973053 aaggaatgcaaaatggtggtactcgactttccacaatgtcactgccatggttggagctggtgt 7972991  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 8040988 - 8041050
Alignment:
Q  216 aaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgt 278  Q
    |||||||||||||||||||||| |  |||| |||||||| |||||||||||||||||||||||    
T  8040988 aaggaatgcaaaatggtggtactcgactttccacaatgtcactgccatggttggagctggtgt 8041050  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 8031620 - 8031682
Alignment:
Q  216 aaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgt 278  Q
    |||||||||||||||||||||  |  |||| |||||||| ||||| |||||||||||||||||    
T  8031620 aaggaatgcaaaatggtggtattcttctttccacaatgtcactgcaatggttggagctggtgt 8031682  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 14199257 - 14199157
Alignment:
Q  178 caaaaggcaatagatgattggcttcccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtg 277  Q
    ||||| ||||| ||||| |||||||| || | ||| ||||| |||||||||||||||||  | || || |||||||||||||||||||||||||||||||    
T  14199257 caaaaagcaattgatgactggcttccaattagttcgtcaagaaatgcaaaatggtggtattctgcattccacaatgttactgccatggttggagctggtg 14199158  T
Q  278 t 278  Q
    |    
T  14199157 t 14199157  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 38828058 - 38827942
Alignment:
Q  176 aacaaaaggcaatagatgattggcttcccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctgg 275  Q
    |||||||||| || ||||||||||||||  ||||| |||| || ||||| |||||||||||  | || || |||||| | || ||||||||||| |||||    
T  38828058 aacaaaaggccattgatgattggcttcctgtaactgcttctagaaatgccaaatggtggtattcggcgttccacaatctaacagccatggttggtgctgg 38827959  T
Q  276 tgtcttgagtcttccat 292  Q
    |||  | ||||||||||    
T  38827958 tgttctcagtcttccat 38827942  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 361842 - 361786
Alignment:
Q  223 gcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgtc 279  Q
    ||||||||||||||  || ||||||| ||||| ||||| |||||||| |||||||||    
T  361842 gcaaaatggtggtattcaacttttcataatgtgactgctatggttggtgctggtgtc 361786  T

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Target: scaffold0531 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 4046 - 3984
Alignment:
Q  216 aaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgt 278  Q
    |||||||||||||||||||||  |  |||| |||||||| ||||| |||||||||||||||||    
T  4046 aaggaatgcaaaatggtggtattcttctttccacaatgtcactgcaatggttggagctggtgt 3984  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 34408878 - 34408966
Alignment:
Q  181 aaggcaatagatgattggcttcccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttgg 269  Q
    ||||| || ||||||||||||||| | ||| | || ||||| || |||||||||||| | |||||||||||| | || |||||||||||    
T  34408878 aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg 34408966  T

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