View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3941_low_33 (Length: 296)

Name: NF3941_low_33
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3941_low_33
NF3941_low_33
[»] chr1 (1 HSPs)
chr1 (13-296)||(47944467-47944756)
[»] chr4 (1 HSPs)
chr4 (13-294)||(6133944-6134237)
[»] chr7 (1 HSPs)
chr7 (13-294)||(20600124-20600420)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 47944467 - 47944756
Alignment:
Q  13 atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcataaaacacggtggaagttctaatccagctttatcacaaagatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47944467 atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcataaaacacggtggaagttctaatccagctttatcacaaagatca 47944566  T
Q  113 attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaccatcg------ttaccattgaattcagaattttcca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      |||||||| ||||||||||||||||    
T  47944567 attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaacatcgttaaaattaccattaaattcagaattttcca 47944666  T
Q  207 gcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccataga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47944667 gcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccataga 47944756  T

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Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 6134237 - 6133944
Alignment:
Q  13 atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcataaaacacggtggaagttctaatccagctttatcacaaagatca 112  Q
    ||||||||| ||||||||||||||||| |  |||||||| ||||| || || | ||||||||| |||||||| |  |||||||||||||||||||||||     
T  6134237 atcatcaccaggaagatactcaaatattaagagcttaagttccattgggaggctcataaaacatggtggaagattcaatccagctttatcacaaagatcc 6134138  T
Q  113 attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaccatcgttaccattga------------attcagaat 200  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||||||||| | || | || |||| ||| |||| |            ||||| |||    
T  6134137 attaaaagtggcaatgcaagcctatcattcactatcttccacaattcaaaaacctcattttcatcatcattaacattaaaactagcaatagattcaaaat 6134038  T
Q  201 tttccagcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccata 294  Q
    ||   ||||| || | ||||||||| | ||||||| |||||||||||||||||||||| ||  |||||||| |||||||| |||||||||||||    
T  6134037 ttgatagcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtacatttgacccaacatcatcatacaatgaaccata 6133944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 20600420 - 20600124
Alignment:
Q  13 atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcataaaacacggtggaagttctaatccagctttatcacaaagatca 112  Q
    ||||||||| ||||||||||||||||| |  |||||||| ||||| || || | ||||||||| ||||||||    ||||||||||||||||||||||||    
T  20600420 atcatcaccaggaagatactcaaatattacgagcttaagttccattgggaggctcataaaacaaggtggaagaatcaatccagctttatcacaaagatca 20600321  T
Q  113 attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaa------ctttatctccaccatcgtt------accattgaattcagaat 200  Q
    ||||| ||||| |||||||||| ||| |||||||||||||||||||| ||||      ||||||| ||| || | ||      | ||||  |||||||||    
T  20600320 attaaaagtggaaatgcaagcctatcgttcactatcttccacaattccaaaacttcatctttatcaccatcaacattaacacaagcattagattcagaat 20600221  T
Q  201 tt---tccagcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccata 294  Q
    ||     |||||  || ||||||||||| ||||||||| ||||||||||||||||| |||| || ||||||||| |||||||| |||||||||||||    
T  20600220 ttgacatcagcagaaactctaaaggcttggcaaatctacatttatctaaataaaccatatgtacacttgacccaacatcatcatacaatgaaccata 20600124  T

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