View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3941_low_34 (Length: 292)

Name: NF3941_low_34
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3941_low_34
NF3941_low_34
[»] chr7 (13 HSPs)
chr7 (44-282)||(28288926-28289158)
chr7 (1-32)||(10599168-10599199)
chr7 (1-32)||(37815934-37815965)
chr7 (1-32)||(40339413-40339444)
chr7 (3-33)||(18886848-18886878)
chr7 (2-32)||(33845337-33845367)
chr7 (1-34)||(24133277-24133310)
chr7 (1-30)||(41137685-41137714)
chr7 (1-29)||(4268568-4268596)
chr7 (1-33)||(5723196-5723228)
chr7 (1-33)||(8603927-8603959)
chr7 (1-33)||(27947668-27947700)
chr7 (1-29)||(32097324-32097352)
[»] chr4 (7 HSPs)
chr4 (1-34)||(30780295-30780328)
chr4 (1-32)||(7905923-7905954)
chr4 (1-32)||(44572039-44572070)
chr4 (1-32)||(47321353-47321384)
chr4 (1-32)||(50623294-50623325)
chr4 (1-33)||(32141133-32141165)
chr4 (1-29)||(39982059-39982087)
[»] chr2 (5 HSPs)
chr2 (1-34)||(12342303-12342336)
chr2 (1-32)||(6247675-6247706)
chr2 (1-33)||(13562203-13562235)
chr2 (5-33)||(25332785-25332813)
chr2 (1-33)||(45081817-45081849)
[»] chr1 (18 HSPs)
chr1 (1-34)||(46554752-46554785)
chr1 (1-33)||(12002199-12002231)
chr1 (1-32)||(13408246-13408277)
chr1 (1-32)||(28200392-28200423)
chr1 (1-32)||(48025420-48025451)
chr1 (3-33)||(27721274-27721304)
chr1 (1-31)||(43358367-43358397)
chr1 (1-34)||(18794708-18794741)
chr1 (1-34)||(46045926-46045959)
chr1 (1-34)||(46286988-46287021)
chr1 (1-34)||(52125044-52125077)
chr1 (1-33)||(14593267-14593299)
chr1 (1-33)||(24884365-24884397)
chr1 (1-33)||(26352001-26352033)
chr1 (1-29)||(34047157-34047185)
chr1 (1-33)||(34047402-34047434)
chr1 (5-33)||(44024498-44024526)
chr1 (1-33)||(48259774-48259806)
[»] chr5 (7 HSPs)
chr5 (1-33)||(15400382-15400414)
chr5 (1-32)||(29653681-29653712)
chr5 (1-30)||(24436454-24436483)
chr5 (1-34)||(38369825-38369858)
chr5 (1-34)||(42104232-42104265)
chr5 (5-33)||(15566451-15566479)
chr5 (1-33)||(29653423-29653455)
[»] chr3 (12 HSPs)
chr3 (1-33)||(31290885-31290917)
chr3 (1-32)||(37225762-37225793)
chr3 (1-32)||(42886948-42886979)
chr3 (1-33)||(4392105-4392137)
chr3 (1-33)||(32492343-32492375)
chr3 (1-29)||(36844907-36844935)
chr3 (1-33)||(38277962-38277994)
chr3 (1-33)||(38364001-38364033)
chr3 (5-33)||(43169288-43169316)
chr3 (1-33)||(44648321-44648353)
chr3 (1-33)||(44648568-44648600)
chr3 (1-33)||(45213885-45213917)
[»] chr8 (4 HSPs)
chr8 (1-32)||(9022605-9022636)
chr8 (1-32)||(9880668-9880699)
chr8 (1-32)||(36915574-36915605)
chr8 (1-34)||(8382397-8382430)
[»] chr6 (2 HSPs)
chr6 (1-32)||(23936495-23936526)
chr6 (1-33)||(29399899-29399931)
[»] scaffold0332 (1 HSPs)
scaffold0332 (1-33)||(3732-3764)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 44 - 282
Target Start/End: Complemental strand, 28289158 - 28288926
Alignment:
Q  44 cttatagtagtaactggagggtgtagaatgttttgcaaaaaagattgggtattgtaattagggatggagctaaaaagggactaacaaaagccacggtttc 143  Q
    |||||| ||||||||||||||||||| | ||||| |||||| ||||||| |||||||||||||||||||||| || ||||||| || |||||||||||||    
T  28289158 cttataatagtaactggagggtgtaggaagttttacaaaaaggattgggcattgtaattagggatggagctagaaggggactagcagaagccacggtttc 28289059  T
Q  144 ctcaaactttnnnnnnnnnnnnnnnnnnnnctattagcatacaattataggttttggt-cctacata-nnnnnnnnnnaactttata--atattgtataa 239  Q
    ||||||||||                    |||||||||| ||||||||||||||||| ||||||||           |||||||||  |||||||||||    
T  28289058 ctcaaacttt----------taaaaaaaaactattagcatgcaattataggttttggtccctacatatatatttttttaactttatatgatattgtataa 28288969  T
Q  240 tggtccttttttaactcaatatattggatcttaaacacctatg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28288968 tggtccttttttaactcaatatattggatcttaaacacctatg 28288926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10599199 - 10599168
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  10599199 aaaacgacactcattttaaaacggagggagta 10599168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 37815934 - 37815965
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  37815934 aaaacgacactcattttaaaacggagggagta 37815965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 40339444 - 40339413
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  40339444 aaaacgacactcattttaaaacggagggagta 40339413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 18886848 - 18886878
Alignment:
Q  3 aacgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||||||||    
T  18886848 aacgacactcattttaaaacggagggagtaa 18886878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 33845367 - 33845337
Alignment:
Q  2 aaacgacactcattttaaaacggagggagta 32  Q
    |||||||||||||||||||||||||||||||    
T  33845367 aaacgacactcattttaaaacggagggagta 33845337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24133277 - 24133310
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  24133277 aaaacaacactcattttaaaacggagggagtaaa 24133310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41137714 - 41137685
Alignment:
Q  1 aaaacgacactcattttaaaacggagggag 30  Q
    ||||||||||||||||||||||||||||||    
T  41137714 aaaacgacactcattttaaaacggagggag 41137685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4268596 - 4268568
Alignment:
Q  1 aaaacgacactcattttaaaacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  4268596 aaaacgacactcattttaaaacggaggga 4268568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5723196 - 5723228
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  5723196 aaaacgacactcattttaaaacggatggagtaa 5723228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8603959 - 8603927
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  8603959 aaaacgacactcattttaaaacggagagagtaa 8603927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27947668 - 27947700
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  27947668 aaaacgacactcattttgaaacggagggagtaa 27947700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 32097324 - 32097352
Alignment:
Q  1 aaaacgacactcattttaaaacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  32097324 aaaacgacactcattttaaaacggaggga 32097352  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30780295 - 30780328
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30780295 aaaacgacactcattttaaaacggagggagtaaa 30780328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7905954 - 7905923
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  7905954 aaaacgacactcattttaaaacggagggagta 7905923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 44572039 - 44572070
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  44572039 aaaacgacactcattttaaaacggagggagta 44572070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 47321353 - 47321384
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  47321353 aaaacgacactcattttaaaacggagggagta 47321384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 50623294 - 50623325
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  50623294 aaaacgacactcattttaaaacggagggagta 50623325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32141133 - 32141165
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  32141133 aaaacgacactcattttgaaacggagggagtaa 32141165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39982087 - 39982059
Alignment:
Q  1 aaaacgacactcattttaaaacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  39982087 aaaacgacactcattttaaaacggaggga 39982059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12342303 - 12342336
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  12342303 aaaacgacactcattttaaaacggagggagtaaa 12342336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6247706 - 6247675
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  6247706 aaaacgacactcattttaaaacggagggagta 6247675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13562203 - 13562235
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||||||| |||||||||||    
T  13562203 aaaacgacactcattttaaaatggagggagtaa 13562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 25332785 - 25332813
Alignment:
Q  5 cgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||||||    
T  25332785 cgacactcattttaaaacggagggagtaa 25332813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45081849 - 45081817
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  45081849 aaaacgacactcattttaaaacggatggagtaa 45081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 46554785 - 46554752
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  46554785 aaaacgacactcattttaaaacggagggagtaaa 46554752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12002231 - 12002199
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  12002231 aaaacgacactcattttaaaacggagggagtaa 12002199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 13408277 - 13408246
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  13408277 aaaacgacactcattttaaaacggagggagta 13408246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 28200392 - 28200423
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  28200392 aaaacgacactcattttaaaacggagggagta 28200423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48025420 - 48025451
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  48025420 aaaacgacactcattttaaaacggagggagta 48025451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 27721274 - 27721304
Alignment:
Q  3 aacgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||||||||    
T  27721274 aacgacactcattttaaaacggagggagtaa 27721304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 43358367 - 43358397
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagt 31  Q
    |||||||||||||||||||||||||||||||    
T  43358367 aaaacgacactcattttaaaacggagggagt 43358397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18794708 - 18794741
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    ||||||||| ||||||||||||||||||||||||    
T  18794708 aaaacgacaatcattttaaaacggagggagtaaa 18794741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 46045959 - 46045926
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  46045959 aaaacgacactcattttaaaacggggggagtaaa 46045926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 46286988 - 46287021
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    |||||||||||||||||||||| |||||||||||    
T  46286988 aaaacgacactcattttaaaacagagggagtaaa 46287021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52125077 - 52125044
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  52125077 aaaacgacactcattttaaaacggatggagtaaa 52125044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14593299 - 14593267
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  14593299 aaaacaacactcattttaaaacggagggagtaa 14593267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24884397 - 24884365
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||| |||||||||||||||||||||||    
T  24884397 aaaacgacattcattttaaaacggagggagtaa 24884365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26352033 - 26352001
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  26352033 aaaacgacactcattttaaaacggatggagtaa 26352001  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34047185 - 34047157
Alignment:
Q  1 aaaacgacactcattttaaaacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  34047185 aaaacgacactcattttaaaacggaggga 34047157  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34047402 - 34047434
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  34047402 aaaacgacactcattttaaaacggatggagtaa 34047434  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 44024526 - 44024498
Alignment:
Q  5 cgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||||||    
T  44024526 cgacactcattttaaaacggagggagtaa 44024498  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 48259806 - 48259774
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  48259806 aaaacgacactcattttgaaacggagggagtaa 48259774  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15400382 - 15400414
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  15400382 aaaacgacactcattttaaaacggagggagtaa 15400414  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 29653681 - 29653712
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  29653681 aaaacgacactcattttaaaacggagggagta 29653712  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 24436483 - 24436454
Alignment:
Q  1 aaaacgacactcattttaaaacggagggag 30  Q
    ||||||||||||||||||||||||||||||    
T  24436483 aaaacgacactcattttaaaacggagggag 24436454  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38369858 - 38369825
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    ||||||||| ||||||||||||||||||||||||    
T  38369858 aaaacgacattcattttaaaacggagggagtaaa 38369825  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42104232 - 42104265
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  42104232 aaaacgacactcattttgaaacggagggagtaaa 42104265  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 15566479 - 15566451
Alignment:
Q  5 cgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||||||    
T  15566479 cgacactcattttaaaacggagggagtaa 15566451  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29653455 - 29653423
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||||||| |||||||||||    
T  29653455 aaaacgacactcattttaaaatggagggagtaa 29653423  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31290917 - 31290885
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  31290917 aaaacgacactcattttaaaacggagggagtaa 31290885  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 37225762 - 37225793
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  37225762 aaaacgacactcattttaaaacggagggagta 37225793  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 42886948 - 42886979
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  42886948 aaaacgacactcattttaaaacggagggagta 42886979  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4392105 - 4392137
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  4392105 aaaacgacactcattttgaaacggagggagtaa 4392137  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32492343 - 32492375
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  32492343 aaaacgacactcattttgaaacggagggagtaa 32492375  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 36844907 - 36844935
Alignment:
Q  1 aaaacgacactcattttaaaacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  36844907 aaaacgacactcattttaaaacggaggga 36844935  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38277962 - 38277994
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||||||| |||||||||||    
T  38277962 aaaacgacactcattttaaaatggagggagtaa 38277994  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38364001 - 38364033
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  38364001 aaaacgacactcattttaaaacggagagagtaa 38364033  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 43169316 - 43169288
Alignment:
Q  5 cgacactcattttaaaacggagggagtaa 33  Q
    |||||||||||||||||||||||||||||    
T  43169316 cgacactcattttaaaacggagggagtaa 43169288  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44648353 - 44648321
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  44648353 aaaacgacactcattttgaaacggagggagtaa 44648321  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44648568 - 44648600
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  44648568 aaaacgacactcattttgaaacggagggagtaa 44648600  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 45213885 - 45213917
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||||||||||||| |||||    
T  45213885 aaaacgacactcattttaaaacggaggaagtaa 45213917  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 9022605 - 9022636
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  9022605 aaaacgacactcattttaaaacggagggagta 9022636  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 9880668 - 9880699
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  9880668 aaaacgacactcattttaaaacggagggagta 9880699  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 36915574 - 36915605
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  36915574 aaaacgacactcattttaaaacggagggagta 36915605  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8382430 - 8382397
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaaa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  8382430 aaaacgacactcattttaaaacggatggagtaaa 8382397  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 23936526 - 23936495
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  23936526 aaaacgacactcattttaaaacggagggagta 23936495  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29399931 - 29399899
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  29399931 aaaacgacactcattttgaaacggagggagtaa 29399899  T

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Target: scaffold0332 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3764 - 3732
Alignment:
Q  1 aaaacgacactcattttaaaacggagggagtaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  3764 aaaacgacactcattttaaaacggaaggagtaa 3732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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