View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_35 (Length: 290)
Name: NF3941_low_35
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 3649238 - 3649375
Alignment:
| Q |
14 |
aggagattgacaatgagatagaaggtttcaataaaggagattgaaaatgaaaaaacatgtgcgcgcgtgtttgaactatgcaaaaaccagatgaagaagg |
113 |
Q |
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| T |
3649238 |
aggagattgacaatgagatagaaggtttcaataaaggagattgaaaatgaaaaaacatgtgcgcgcgtgtttgaactatgcaaaaaccagatgaagaagg |
3649337 |
T |
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| Q |
114 |
ttgagacattgatgaagagagatcatattagaagaatc |
151 |
Q |
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| T |
3649338 |
ttgagacattgatgaagagagatcatattagaagaatc |
3649375 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 3649439 - 3649498
Alignment:
| Q |
215 |
atattacagggacaacatactgacatgaagcttggtcaaatattattacaaccaaaattt |
274 |
Q |
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| T |
3649439 |
atattatagggacaacatactgacatgaagcttggtcaaatattattacaaccaaaattt |
3649498 |
T |
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