View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3941_low_36 (Length: 287)

Name: NF3941_low_36
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3941_low_36
NF3941_low_36
[»] chr5 (3 HSPs)
chr5 (13-271)||(36566235-36566493)
chr5 (13-208)||(36629794-36629989)
chr5 (13-257)||(36577143-36577387)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 36566493 - 36566235
Alignment:
Q  13 aatatttgtagccctttctaatgggagacaaccaataggaacaagaccagttatagataatttcctagcaccaagtgagtgtaattttctaacaaaatcc 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36566493 aatatttgtagccctttctaatgggagacacccaataggaacaagaccagttatagataatttcctagcaccaagtgagtgtaattttctaacgaaatcc 36566394  T
Q  113 gcagcaatatccactagaaaatcttgatattgtgatacggtgaaatgaagttgtcttgttgggaaaatatagtaattttcaaggaaatcatttgttccta 212  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36566393 tcagcaatatccactagaaaatcttgatattgtgatacggtgaaatgaagttgtcttgttgggaaaatatagtaattttcaaggaaatcatttgttccta 36566294  T
Q  213 agcttattaggtataatgcctcacttatgatttcatttgctttctttttaccaacatgg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36566293 agcttattaggtataatgcctcacttatgatttcatttgctttctttttaccaacatgg 36566235  T

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Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 36629989 - 36629794
Alignment:
Q  13 aatatttgtagccctttctaatgggagacaaccaataggaacaagaccagttatagataatttcctagcaccaagtgagtgtaattttctaacaaaatcc 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36629989 aatatttgtagccctttctaatgggagacacccaataggaacaagaccagttatagataatttcctagcaccaagtgagtgtaattttctaacgaaatcc 36629890  T
Q  113 gcagcaatatccactagaaaatcttgatattgtgatacggtgaaatgaagttgtcttgttgggaaaatatagtaattttcaaggaaatcatttgtt 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36629889 tcagcaatatccactagaaaatcttgatattgtgatacggtgaaatgaagttgtcttgttgggaaaatatagtaattttcaaggaaatcatttgtt 36629794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 36577387 - 36577143
Alignment:
Q  13 aatatttgtagccctttctaatgggagacaaccaataggaacaagaccagttatagataatttcctagcaccaagtgagtgtaattttctaacaaaatcc 112  Q
    ||||||| |||||||||||||||| ||||| || ||||||| |||||||||||| | ||||||||||||||||||||||| |||||  ||||  |||| |    
T  36577387 aatatttatagccctttctaatggaagacaccccataggaataagaccagttatggctaatttcctagcaccaagtgagtataattgcctaatgaaattc 36577288  T
Q  113 gcagcaatatccactagaaaatcttgatattgtgatacggtgaaatgaagttgtcttgttgggaaaatatagtaattttcaaggaaatcatttgttccta 212  Q
     |||||||| | | || | ||||||||||||||||||  ||| || | | |  |  ||||| ||||  |||||| ||| ||||||||||||| |||||||    
T  36577287 tcagcaataccaattaaataatcttgatattgtgatattgtgtaacggaatcttagtgttgtgaaaccatagtagtttccaaggaaatcattggttccta 36577188  T
Q  213 agcttattaggtataatgcctcacttatgatttcatttgctttct 257  Q
    | ||||||| ||||||||| ||||||||||||||| ||| |||||    
T  36577187 aacttattatgtataatgcttcacttatgatttcaattgatttct 36577143  T

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