View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3941_low_46 (Length: 255)

Name: NF3941_low_46
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3941_low_46
NF3941_low_46
[»] chr8 (6 HSPs)
chr8 (18-240)||(26592128-26592347)
chr8 (84-187)||(43479673-43479776)
chr8 (18-213)||(25865660-25865855)
chr8 (18-213)||(41943904-41944099)
chr8 (87-184)||(44343984-44344081)
chr8 (135-187)||(38807073-38807125)
[»] chr4 (4 HSPs)
chr4 (18-223)||(34748715-34748920)
chr4 (18-181)||(24860506-24860669)
chr4 (82-211)||(40045368-40045497)
chr4 (117-213)||(40036095-40036191)
[»] chr2 (3 HSPs)
chr2 (18-187)||(13576308-13576477)
chr2 (18-213)||(34571419-34571614)
chr2 (109-202)||(34562636-34562729)
[»] chr5 (4 HSPs)
chr5 (18-188)||(12546997-12547167)
chr5 (18-181)||(12531452-12531615)
chr5 (102-175)||(9866668-9866741)
chr5 (99-179)||(9870022-9870102)
[»] chr7 (2 HSPs)
chr7 (18-187)||(21317534-21317703)
chr7 (18-187)||(3929960-3930129)
[»] scaffold0197 (1 HSPs)
scaffold0197 (18-187)||(30971-31140)
[»] chr1 (1 HSPs)
chr1 (87-213)||(7594104-7594230)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 26592128 - 26592347
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26592128 gttcgtgagattgctcaggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgt 26592227  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcgagcgtgcttgatc 217  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26592228 ttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcgagcgtgcttgatc 26592327  T
Q  218 ttgttgttgttcgtgagttgtga 240  Q
       ||||||||||||||||||||    
T  26592328 ---ttgttgttcgtgagttgtga 26592347  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 43479776 - 43479673
Alignment:
Q  84 caagaagcggcggaggcttatcttattggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagc 183  Q
    |||||||| || || ||||||||| |||| |||||||| ||||||||||| |||||||| ||||||||| | ||||| || ||||||||||||||||| |    
T  43479776 caagaagccgctgaagcttatcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaac 43479677  T
Q  184 ttgc 187  Q
    ||||    
T  43479676 ttgc 43479673  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 25865660 - 25865855
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    |||||||| |||||||| |||||||| ||||||||  | ||||||||   ||||||    || || || ||||| || |||||||||||| | |||||||    
T  25865660 gttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgt 25865759  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcgagcgtgctt 213  Q
    |||||||||||||  | || || || ||||||||| | || || || ||||| |||||||||||||||||| | ||||| ||||| || |||||||    
T  25865760 ttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcgtcgtattcgtggtgaacgtgctt 25865855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 41943904 - 41944099
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    |||||||| ||||||||||||||||||||||||||| | || ||||||  ||||||    || || || ||||| || || ||||||||  |||||||||    
T  41943904 gttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgt 41944003  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcgagcgtgctt 213  Q
    |||||||||| ||  | || || || ||||||||| | ||||| || ||||| ||||| ||||| |||||  | ||||| ||||| || |||||||    
T  41944004 ttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgtattcgtggtgaacgtgctt 41944099  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 44343984 - 44344081
Alignment:
Q  87 gaagcggcggaggcttatcttattggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagct 184  Q
    ||||| || |||||||||||  | ||||||||||||||||| ||  | || ||||| ||||||||| | || || || ||||| ||||||||||||||    
T  44343984 gaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattcagct 44344081  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 38807073 - 38807125
Alignment:
Q  135 tgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 187  Q
    ||||| || ||||||||| | |||||||||||||||||||| ||||| |||||    
T  38807073 tgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgc 38807125  T

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Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 34748715 - 34748920
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||  ||||  | |    
T  34748715 gttcgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttatctcgttggtctct 34748814  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcgagcgtgcttgatc 217  Q
    ||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  34748815 ttgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatatccagctcgctaggcgtatccgtggcgagcgtgcttgatc 34748914  T
Q  218 ttgttg 223  Q
    ||||||    
T  34748915 ttgttg 34748920  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 24860506 - 24860669
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    |||||||| || |||||||||||||| || ||||||||||| |||||    ||||| || || || |||||||| || || ||||||||  ||||| | |    
T  24860506 gttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactct 24860605  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 181  Q
    |||| ||||| || || |||||||| ||||||||| | ||||| || ||||| |||||||||||    
T  24860606 ttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattca 24860669  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 40045368 - 40045497
Alignment:
Q  82 tgcaagaagcggcggaggcttatcttattggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 181  Q
    ||||||| || || ||||| |||||| ||||  | |||||||| |||||| | |||||||||||||| ||||| |||||||| ||||| ||||| || ||    
T  40045368 tgcaagaggctgctgaggcatatcttgttggtctctttgaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaaggacatcca 40045467  T
Q  182 gcttgctaggcgtatccgtggcgagcgtgc 211  Q
    | | || ||| | |||||||||||||||||    
T  40045468 gttggcaaggaggatccgtggcgagcgtgc 40045497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 40036095 - 40036191
Alignment:
Q  117 tttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcgagcgtgctt 213  Q
    |||||||| |||||| | || ||||||||||| ||||| |||||||| ||||| ||||| || ||| | || ||| | |||||||| ||||| ||||    
T  40036095 tttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaaggacatccagttggcaaggaggatccgtggtgagcgcgctt 40036191  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 13576308 - 13576477
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    ||||| || |||||||| |||||||| ||||||||||||||||| |||  |||||| || || || |||||||| || || ||||||||| |||| ||||    
T  13576308 gttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 13576407  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 187  Q
    |||||||||| || || || ||||| ||||||||| | |||||||| ||||||||||||||||| |||||    
T  13576408 ttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgc 13576477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 34571614 - 34571419
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    |||||||| |||||||| ||||||||||||||| | || || ||||||  ||| ||    || || || ||||| ||||| || ||| |  |||| ||||    
T  34571614 gttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgt 34571515  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcgagcgtgctt 213  Q
    |||||||||| ||  | || || || ||||||||| | ||||| || ||||||||||||||||| |||||| | ||||||||||| || |||||||    
T  34571514 ttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgtgctt 34571419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 34562729 - 34562636
Alignment:
Q  109 ttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtgg 202  Q
    |||| |||||||||||||| ||  | || || || ||||||||| | ||||| || ||||||||||||||||| |||||| | |||||||||||    
T  34562729 ttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgcttgccgtatccgtgg 34562636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 12547167 - 12546997
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    |||||||| || |||||||||||||| || |||||||| || || |||  |||||| || || || |||||||| || || ||||||||| |||| ||||    
T  12547167 gttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 12547068  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgct 188  Q
    |||| |||||||| ||||| || || ||||||||| | |||||||||||||||||||||||||| ||||||    
T  12547067 ttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgct 12546997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 12531452 - 12531615
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    |||||||| || |||||||||||||| || |||||||| || || |||  |||||| || || || |||||||| || || ||||||||| |||| ||||    
T  12531452 gttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 12531551  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 181  Q
    |||| |||||||| ||||| || || ||||||||| | ||||||||||||||||||||||||||    
T  12531552 ttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 12531615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 9866741 - 9866668
Alignment:
Q  102 tatcttattggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaagga 175  Q
    |||||| |||| |||||||| ||||||||||| || ||||| ||||||||| | |||||||| |||||| ||||    
T  9866741 tatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcctgagga 9866668  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 9870022 - 9870102
Alignment:
Q  99 gcttatcttattggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatatt 179  Q
    |||||| || |||| |||||| | |||| ||| || |||||||| ||||||||| | |||||||| |||||||||||||||    
T  9870022 gcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt 9870102  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 21317534 - 21317703
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    |||||||| || ||||| |||||||| || |||||| | || ||||||  |||||| || || || ||||||||||| || ||||||||| |||| ||||    
T  21317534 gttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgt 21317633  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 187  Q
    |||| ||||| || || |||||||| ||||||||| | |||||||| ||||||||||||||||| |||||    
T  21317634 ttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc 21317703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 3930129 - 3929960
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    |||||||| || ||||| |||||||| || ||||| || ||||||||   |||||| || || || |||||||| || || || |||||| |||| ||||    
T  3930129 gttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgt 3930030  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 187  Q
    |||| ||||| || || || || || ||||||||| | |||||||| ||||| ||||||||||| |||||    
T  3930029 ttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgc 3929960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 30971 - 31140
Alignment:
Q  18 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttattggattgt 117  Q
    |||||||| || ||||| |||||||| ||  ||||| | || ||||||  |||||| || || || |||||||| || || ||||||||| |||| ||||    
T  30971 gttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 31070  T
Q  118 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 187  Q
    |||| ||||| || || |||||||| ||||||||| | |||||||| ||||||||||||||||| |||||    
T  31071 ttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc 31140  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 7594230 - 7594104
Alignment:
Q  87 gaagcggcggaggcttatcttattggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttg 186  Q
    ||||| || |||||||| ||  |||||||||||||||| || || || || || || ||||||||| | || || || ||||| ||||||||||||||||    
T  7594230 gaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattcagcttg 7594131  T
Q  187 ctaggcgtatccgtggcgagcgtgctt 213  Q
    || | || || ||||| || |||||||    
T  7594130 ctcgtcgcattcgtggtgaacgtgctt 7594104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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