View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3941_low_5 (Length: 509)

Name: NF3941_low_5
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3941_low_5
NF3941_low_5
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-494)||(88613-89104)
[»] scaffold0005 (1 HSPs)
scaffold0005 (389-442)||(257695-257748)
[»] chr8 (3 HSPs)
chr8 (386-442)||(38229867-38229923)
chr8 (388-442)||(26938442-26938496)
chr8 (385-442)||(34632224-34632281)
[»] chr7 (2 HSPs)
chr7 (388-442)||(46426663-46426717)
chr7 (385-442)||(21455812-21455869)
[»] chr2 (3 HSPs)
chr2 (384-442)||(12937642-12937700)
chr2 (385-442)||(9027283-9027340)
chr2 (386-442)||(44490304-44490360)
[»] chr1 (2 HSPs)
chr1 (386-428)||(48524762-48524804)
chr1 (386-442)||(43726213-43726269)
[»] scaffold0077 (1 HSPs)
scaffold0077 (385-442)||(10177-10234)
[»] chr4 (2 HSPs)
chr4 (387-428)||(5748135-5748176)
chr4 (385-442)||(32488583-32488640)
[»] chr3 (2 HSPs)
chr3 (387-428)||(18678173-18678214)
chr3 (386-442)||(44664621-44664677)


Alignment Details
Target: scaffold0024 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 89104 - 88613
Alignment:
Q  1 gtcctatctaaaatagtggaaatcatatgaattttagttagtaaaagagtgattgttagagagtcttaaaaataaagtgttcttttgttggaatatttta 100  Q
    |||||||||||| ||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  89104 gtcctatctaaagtagtggaaatcatataaattttagctggtaaaagagtgatcgttagagagtcttaaaaataaagtgttcttt-gttggaatatttta 89006  T
Q  101 atatagatgaccaaaatcattaatacaaagttatgtcatattataagaatacaattaattagggaccttgtatgatcgataaatcatatgggcgatggag 200  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  89005 atatagatgaccaaaatcattgatacaaggttatgtcatattataagaatacaattaattagggaccttgtatgatcgataaatcatatgggcgatg-ag 88907  T
Q  201 taaatcatgagagaagcgttagggttgagagcttaaattttctatgttgcttttacgctgacctaaatggaatactc-gtatatataaacatcaacaaag 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||    
T  88906 taaatcatgagagaagcgttagggttgagagcttaaattttctatgttgcttttacgctgacctaa-tggaatactcagtatgtataaacatcaacagag 88808  T
Q  300 agatgaacctttcaacgagctcaccaaacaaataacccaactcaccgcagataataacaattaaatatttattcatattttagataggcaaaattacact 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  88807 agatgaacctttcaacgagctcaccaaacaaataacccaactcaccgcagatcataacaattaaatatttattcatattttagataggcaaaattacact 88708  T
Q  400 tttaattcattgacttaattttagataacgatttagtcctttagatacatttgcatggactttcaagcttcaaattcatgagtttctttttccta 494  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  88707 tttaattccttgacttaatttcagataacgatttagtcctttagatacatttgcatggattttcaagcttcaaattcatgagtttctttttccta 88613  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 257695 - 257748
Alignment:
Q  389 aaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    ||||||||||||||||| |||||||||||||| || |||| |||| ||||||||    
T  257695 aaaattacacttttaatccattgacttaatttcaggtaacaatttcgtccttta 257748  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 38229923 - 38229867
Alignment:
Q  386 ggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    |||||||||||| ||||| ||| || ||||||||||||||||| |||||||| ||||    
T  38229923 ggcaaaattacatttttagttctttaacttaattttagataacaatttagtcattta 38229867  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 26938496 - 26938442
Alignment:
Q  388 caaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    |||||||||||||||| | | || |||||||||||| |||| |||||||||||||    
T  26938496 caaaattacacttttagtcccttaacttaattttaggtaacaatttagtccttta 26938442  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Original strand, 34632224 - 34632281
Alignment:
Q  385 aggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    |||||||||||||||||| || | || |||| ||||||| |||| |||||||||||||    
T  34632224 aggcaaaattacacttttgatcccttaactttattttaggtaacaatttagtccttta 34632281  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 46426663 - 46426717
Alignment:
Q  388 caaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    |||||||||||||||||| | || |||||||||||| |||| |||| ||||||||    
T  46426663 caaaattacacttttaatcctttaacttaattttaggtaacaatttggtccttta 46426717  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 21455869 - 21455812
Alignment:
Q  385 aggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    ||||||||||||||||||| ||| || | |||||||||| |||| |||| ||||||||    
T  21455869 aggcaaaattacacttttagttccttaatttaattttaggtaacaatttggtccttta 21455812  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 12937700 - 12937642
Alignment:
Q  384 taggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    |||||||||||||||||||||| | || ||||||||| ||||||   ||||||||||||    
T  12937700 taggcaaaattacacttttaatcccttaacttaatttcagataatagtttagtccttta 12937642  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 9027340 - 9027283
Alignment:
Q  385 aggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    ||||||||||||||||||||| | || ||||||||| || ||||  ||||||||||||    
T  9027340 aggcaaaattacacttttaatcccttaacttaatttcaggtaacagtttagtccttta 9027283  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 44490304 - 44490360
Alignment:
Q  386 ggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    |||||||||||||||||| ||| || ||||||||| || ||||  ||||||||||||    
T  44490304 ggcaaaattacacttttagttccttaacttaatttcaggtaacagtttagtccttta 44490360  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 48524804 - 48524762
Alignment:
Q  386 ggcaaaattacacttttaattcattgacttaattttagataac 428  Q
    |||||||||||||||||||||| || ||||||||| |||||||    
T  48524804 ggcaaaattacacttttaattccttaacttaatttcagataac 48524762  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 43726213 - 43726269
Alignment:
Q  386 ggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    |||||||||||||||||| ||| || ||||||||| |||||||  ||| ||||||||    
T  43726213 ggcaaaattacacttttagttccttaacttaatttcagataacagtttggtccttta 43726269  T

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Target: scaffold0077 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 10234 - 10177
Alignment:
Q  385 aggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    ||||||||||| ||||||||| | || ||||||||| ||||||| |||| ||||||||    
T  10234 aggcaaaattatacttttaatcccttaacttaatttcagataacaatttggtccttta 10177  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 5748176 - 5748135
Alignment:
Q  387 gcaaaattacacttttaattcattgacttaattttagataac 428  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  5748176 gcaaaattacacttttaattccttaacttaatttcagataac 5748135  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Original strand, 32488583 - 32488640
Alignment:
Q  385 aggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    ||||||||||||||||||| | | || |||| ||||||| |||| |||||||||||||    
T  32488583 aggcaaaattacacttttagtcccttaactttattttaggtaacaatttagtccttta 32488640  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 18678214 - 18678173
Alignment:
Q  387 gcaaaattacacttttaattcattgacttaattttagataac 428  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  18678214 gcaaaattacacttttaattccttaacttaatttcagataac 18678173  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 44664621 - 44664677
Alignment:
Q  386 ggcaaaattacacttttaattcattgacttaattttagataacgatttagtccttta 442  Q
    |||||||||||||||||| | | || ||||||||| || |||| |||||||||||||    
T  44664621 ggcaaaattacacttttagtcccttaacttaatttcaggtaacaatttagtccttta 44664677  T

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