View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_53 (Length: 233)
Name: NF3941_low_53
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 47944733 - 47944857
Alignment:
| Q |
11 |
catcatcacacaatgaaccatagacattcacaaaattccctaaagtctgaattttcaaattcacagcatgagatgaaccattcgtaagaatctcaggaag |
110 |
Q |
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| T |
47944733 |
catcatcacacaatgaaccatagacattcacaaaattccctaaagtctgaattttcaatatcacagcatgagatgaaccattggtaagaatctcaggaag |
47944832 |
T |
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| Q |
111 |
agtatacctcaaagatatcattgat |
135 |
Q |
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| T |
47944833 |
agtatacctcaaagatatcattgat |
47944857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 47944899 - 47944958
Alignment:
| Q |
156 |
catatcattaacaagattagagcaactaatcgccagacccgaaacctcgtccacacgaac |
215 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47944899 |
catatcatcaacaagattagagcaactaatcgccatacccgaaacctcgtccacacgaac |
47944958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 20600146 - 20600022
Alignment:
| Q |
10 |
acatcatcacacaatgaaccatagacattcacaaaattccctaaagtctgaattttcaaattcacagcatgagatgaaccattcgtaagaatctcaggaa |
109 |
Q |
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| T |
20600146 |
acatcatcatacaatgaaccataaacattcacaaaatgccctaatgtctgaattttcaaattcaaagaatgagatgaaccattagtaagaatctcaggaa |
20600047 |
T |
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| Q |
110 |
gagtatacctcaaagatatcattga |
134 |
Q |
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| T |
20600046 |
gagtatacctcaaggatatcattga |
20600022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 6133966 - 6133842
Alignment:
| Q |
10 |
acatcatcacacaatgaaccatagacattcacaaaattccctaaagtctgaattttcaaattcacagcatgagatgaaccattcgtaagaatctcaggaa |
109 |
Q |
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||||||||| ||||||||||||| || |||||||||| |||||| ||||||||||||||||||| | ||||| ||||||||| |||||||||||||||| |
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| T |
6133966 |
acatcatcatacaatgaaccataaacgttcacaaaatgccctaatgtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaa |
6133867 |
T |
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| Q |
110 |
gagtatacctcaaagatatcattga |
134 |
Q |
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|||||||||||||| |||||||||| |
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| T |
6133866 |
gagtatacctcaaacatatcattga |
6133842 |
T |
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