View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3941_low_57 (Length: 206)

Name: NF3941_low_57
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3941_low_57
NF3941_low_57
[»] chr4 (9 HSPs)
chr4 (119-191)||(5638056-5638128)
chr4 (49-108)||(5635258-5635317)
chr4 (1-33)||(3442894-3442926)
chr4 (1-33)||(30295564-30295596)
chr4 (1-33)||(30324466-30324498)
chr4 (1-33)||(37997858-37997890)
chr4 (1-33)||(43323730-43323762)
chr4 (1-33)||(48542173-48542205)
chr4 (5-33)||(49607605-49607633)
[»] chr2 (4 HSPs)
chr2 (1-31)||(40133530-40133560)
chr2 (1-33)||(10262790-10262822)
chr2 (1-33)||(30474207-30474239)
chr2 (1-33)||(37912480-37912512)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-33)||(1090-1122)
[»] chr7 (2 HSPs)
chr7 (1-33)||(22965970-22966002)
chr7 (1-33)||(26734283-26734315)
[»] chr6 (3 HSPs)
chr6 (1-33)||(2970240-2970272)
chr6 (1-33)||(7563588-7563620)
chr6 (1-33)||(26669671-26669703)
[»] chr5 (3 HSPs)
chr5 (1-33)||(1244739-1244771)
chr5 (1-33)||(27025441-27025473)
chr5 (1-33)||(33800944-33800976)
[»] chr3 (2 HSPs)
chr3 (1-33)||(16006518-16006550)
chr3 (1-33)||(43774236-43774268)
[»] chr1 (8 HSPs)
chr1 (2-30)||(12148588-12148616)
chr1 (1-33)||(21884626-21884658)
chr1 (1-33)||(24168591-24168623)
chr1 (1-33)||(25421905-25421937)
chr1 (1-33)||(30649144-30649176)
chr1 (1-33)||(32711156-32711188)
chr1 (1-33)||(42831998-42832030)
chr1 (1-33)||(49251407-49251439)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 5638056 - 5638128
Alignment:
Q  119 agcctgagatgatcaacacataattgaagcaccaaaactcccctccgcaagacagtagcaaagacatcataca 191  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  5638056 agcctgagataatcaacacataattgaagcaccaaaactcccctctgcaagacaatagcaaagacatcataca 5638128  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 5635258 - 5635317
Alignment:
Q  49 cccgtacaaccagtacaatacaacagtaaaactaatcacccaaacatccaaaatacaaac 108  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5635258 cccgtacaatcagtaaaatacaacagtaaaactaatcacccaaacatccaaaatacaaac 5635317  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3442894 - 3442926
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  3442894 ggttcgaaccccagacaccccacttattcacct 3442926  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30295564 - 30295596
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  30295564 ggttcgaaccccagacaccccacttattcacct 30295596  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30324466 - 30324498
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  30324466 ggttcgaaccccagacaccccacttattcacct 30324498  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37997890 - 37997858
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  37997890 ggttcgaaccccagacaccccacttattcacct 37997858  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43323762 - 43323730
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||||||| |||||||||||||||||||||||    
T  43323762 ggttcaaactccagacaccccacttattcacct 43323730  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48542173 - 48542205
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    |||||||||||||||||| ||||||||||||||    
T  48542173 ggttcaaaccccagacactccacttattcacct 48542205  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 49607605 - 49607633
Alignment:
Q  5 caaaccccagacaccccacttattcacct 33  Q
    |||||||||||||||||||||||||||||    
T  49607605 caaaccccagacaccccacttattcacct 49607633  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 40133530 - 40133560
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcac 31  Q
    |||||||||||||||||||||||||||||||    
T  40133530 ggttcaaaccccagacaccccacttattcac 40133560  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10262790 - 10262822
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  10262790 ggttcgaaccccagacaccccacttattcacct 10262822  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30474239 - 30474207
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  30474239 ggttcgaaccccagacaccccacttattcacct 30474207  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37912480 - 37912512
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  37912480 ggttcaaaccccggacaccccacttattcacct 37912512  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1090 - 1122
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  1090 ggttcgaaccccagacaccccacttattcacct 1122  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22966002 - 22965970
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  22966002 ggttcgaaccccagacaccccacttattcacct 22965970  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26734315 - 26734283
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||||||||| |||||||||||||||||||||    
T  26734315 ggttcaaaccctagacaccccacttattcacct 26734283  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2970240 - 2970272
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  2970240 ggttcaaaccccggacaccccacttattcacct 2970272  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7563620 - 7563588
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  7563620 ggttcaaaccccggacaccccacttattcacct 7563588  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26669703 - 26669671
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  26669703 ggttcgaaccccagacaccccacttattcacct 26669671  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1244771 - 1244739
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  1244771 ggttcgaaccccagacaccccacttattcacct 1244739  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27025473 - 27025441
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  27025473 ggttcgaaccccagacaccccacttattcacct 27025441  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33800944 - 33800976
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  33800944 ggttcgaaccccagacaccccacttattcacct 33800976  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16006550 - 16006518
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  16006550 ggttcgaaccccagacaccccacttattcacct 16006518  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43774236 - 43774268
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  43774236 ggttcgaaccccagacaccccacttattcacct 43774268  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 12148616 - 12148588
Alignment:
Q  2 gttcaaaccccagacaccccacttattca 30  Q
    |||||||||||||||||||||||||||||    
T  12148616 gttcaaaccccagacaccccacttattca 12148588  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21884626 - 21884658
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  21884626 ggttcgaaccccagacaccccacttattcacct 21884658  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24168623 - 24168591
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  24168623 ggttcgaaccccagacaccccacttattcacct 24168591  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25421905 - 25421937
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    |||||||||||||||||| ||||||||||||||    
T  25421905 ggttcaaaccccagacactccacttattcacct 25421937  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30649144 - 30649176
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  30649144 ggttcgaaccccagacaccccacttattcacct 30649176  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32711188 - 32711156
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  32711188 ggttcgaaccccagacaccccacttattcacct 32711156  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42831998 - 42832030
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  42831998 ggttcaaaccccggacaccccacttattcacct 42832030  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49251439 - 49251407
Alignment:
Q  1 ggttcaaaccccagacaccccacttattcacct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  49251439 ggttcgaaccccagacaccccacttattcacct 49251407  T

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