View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_6 (Length: 492)
Name: NF3941_low_6
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 40291259 - 40291730
Alignment:
| Q |
1 |
ttagaggcctgatcatacaatttaaaaattattcttgtaaaagaagggggtttgaaacagcaaatgattagtattattaaccacagttgataaaatgtaa |
100 |
Q |
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| T |
40291259 |
ttagaggcctgatcatacaattttaaaattattattgtaaaagaagggggtttgaaacagcaaatgattagtattattaaccacagttgataaaatgtaa |
40291358 |
T |
|
| Q |
101 |
atagaatgcagtctttcttttgaaccaaaacgtctataataataatatcattttcatatgttgtaactctaatgcatttcagtttttagaaatagcaatg |
200 |
Q |
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| T |
40291359 |
atagaatgcagtctttcttttgaaccaaaacgtctataataataatataattttcatatgttgtaactctaatgcatttcagtttttagaaatagcaatg |
40291458 |
T |
|
| Q |
201 |
gtaccatccgagtttgaatactcataatggggagttttaaggaaatgattggtccaacacgtaacttgttatattgcaccattagcaatctactttgcaa |
300 |
Q |
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| T |
40291459 |
gtaccatccgagtttgaatactcataatggggagttttaaggaaatgattggtcc-acacgtaacttgttatattgcacctttagcaatctactttgcaa |
40291557 |
T |
|
| Q |
301 |
cactccaaataccaattgtcataaaattatgtaatatgtagagaataaatctaactatattcttgaaagttattaaattacctcaccaacaacattcaag |
400 |
Q |
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| T |
40291558 |
cactctaaataccaattgtcataaaattatgtaatatgtagagaataaatctaactatattcttgaaagtaattaaattacctcaccaacaacattcaag |
40291657 |
T |
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| Q |
401 |
gaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaagtatgatttcatgtcaaaat |
473 |
Q |
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| T |
40291658 |
gaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaagtatgatttcatgtcaaaat |
40291730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 466
Target Start/End: Original strand, 40271730 - 40271920
Alignment:
| Q |
274 |
ttgcaccattagcaatctactttgcaacactccaaataccaattgtcataaaattatgtaatatgtagagaataaatctaactatattcttgaaagttat |
373 |
Q |
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||||||||| || |||||||||||||||||| ||||| |||||| | || |||||||||| ||| ||| ||||| |||||| | ||| ||| | || |
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| T |
40271730 |
ttgcaccataaggaatctactttgcaacacttcaaatgccaattataatgaaattatgtactatatagt--ataaaactaactcagtgcttcaaactaat |
40271827 |
T |
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| Q |
374 |
taaattacctcaccaacaacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaagtatgatttcatg |
466 |
Q |
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| T |
40271828 |
tagattacctgaccaacaacagttaaggaagttccaaccggaagtacccgttcaatcctcttgaagccaagaatctgaaaatattgtttcatg |
40271920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 453
Target Start/End: Original strand, 40256991 - 40257072
Alignment:
| Q |
372 |
attaaattacctcaccaacaacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaa |
453 |
Q |
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| T |
40256991 |
attagattacctcaccaacaacagtcaaggaagttccaactggaagtacccgttcaattcttttaactccaagcatctgaaa |
40257072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 441
Target Start/End: Original strand, 40265630 - 40265787
Alignment:
| Q |
281 |
attagcaatctactttgcaacactccaaa--taccaattgtcataaaattatgtaatatgtagagaataaatctaactatattcttgaaagttattaaat |
378 |
Q |
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||||| ||||||||||||||||||| ||| ||| ||| | | |||||||||||||| |||| || |||||| |||||||||| | |||| || |
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| T |
40265630 |
attagaaatctactttgcaacactcaaaaaatactaatcatactgaaattatgtaatatatagaaaa-----ctaactgcattcttgaaactgattagat |
40265724 |
T |
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| Q |
379 |
tacctcaccaacaacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtcc |
441 |
Q |
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| T |
40265725 |
tacctcaccaacaacagtcaaggaagttccaaacggaagtgcccattcaattctcttaagtcc |
40265787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 40284382 - 40284478
Alignment:
| Q |
377 |
attacctcaccaacaacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaagtatgatttcatgtcaaaat |
473 |
Q |
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||||||| |||||||||| | || | |||||||||| ||||||| |||||||| ||||| | ||| || ||||||||||||||||||| |||||| |
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| T |
40284382 |
attacctgaccaacaacagttaaagcagttccaaccggaagtactcgttcaatcctcttcaatcccttgacctgaaagtatgatttcatgacaaaat |
40284478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40283791 - 40283832
Alignment:
| Q |
1 |
ttagaggcctgatcatacaatttaaaaattattcttgtaaaa |
42 |
Q |
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||||||||||||||||||| || |||||| |||||||||||| |
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| T |
40283791 |
ttagaggcctgatcatacagttaaaaaataattcttgtaaaa |
40283832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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