View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_low_9 (Length: 463)
Name: NF3941_low_9
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 64 - 458
Target Start/End: Complemental strand, 507569 - 507178
Alignment:
| Q |
64 |
gtttatgtttgaggtatatcttctcttatagcatttgtttcttcagaacaattcagcttcctgcaattcttggatgaacatgacacaaatgctcacaatg |
163 |
Q |
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| T |
507569 |
gtttatgtttggggtatatcttctcttatagcatttgtttcttcagaacaattcagcttcctacaattcttggatgaacatgacacaaatgctcacaatg |
507470 |
T |
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| Q |
164 |
ggttggttgttgatttttacatagttgaaaactggcattagttggacccaacaatgccccacaacgcatgtgcaccatgtgtttatggaaattatcatca |
263 |
Q |
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| T |
507469 |
ggttggttgttgatttttacatagttgaaaactggcattagttggacccaacaatgccccacaacgcatgtgcaccatgtgtttatggaaattatcatca |
507370 |
T |
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| Q |
264 |
catttctcaacctttgctgctatgtcaataaattatgaacagttaaatatatgcataaca-nnnnnnnnnaaggaataataaatatatacataacataac |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
507369 |
catttctcaacctttgctgctatgtcaataaattatgaacagttaaatatatgcataacattttttttttaaggaat----aatatatacataacataac |
507274 |
T |
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| Q |
363 |
aattgatagttagcaatatgtataaatacatgttactgtcctgtgattagaacaaaatgatttttataagaaaaaatggaatagtcctatgcttct |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
507273 |
aattgatagttagcaatatgtataaatacatgttactgtcctgtgattagaacaaaatgatttttataagaaaaaatggaatagtcctatgtttct |
507178 |
T |
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