View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3942_high_4 (Length: 330)
Name: NF3942_high_4
Description: NF3942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3942_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 4 - 314
Target Start/End: Original strand, 17107818 - 17108129
Alignment:
| Q |
4 |
agatggacatcatcatggta-attgaatcgatttaatttcttcaaagtagagatttgattgaaatcaagacataatatttgaacgcccaaaccattatct |
102 |
Q |
| |
|
|||| |||| ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17107818 |
agatagacaccataatggtagattgaatcgatttaatttcttcaaagtagagatttgaatgaaatcaagacataatatttgaacgcccaaaccattatct |
17107917 |
T |
|
| Q |
103 |
tacttgattcaaaaattgaaaagcattactttgaatcaaatcgaagccttaggaaatgaaatttttgagaaaactggaataacaaggtacacatagaatg |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17107918 |
tacttgattcaaaaattgcaaagcattactttgaatcaaatcgaagccttaggaaatgaaatttttgagaaaactggaataacaaggtacacatagaatg |
17108017 |
T |
|
| Q |
203 |
atattaacgttgaagttcataaaacatcatcatagacgacattgacacaaatacgaattagggtgcttcacagaagattgtagcatcgaaaaaattcctt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| | ||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17108018 |
atattaacgttgaagttcataaaacatcatcatagatgacaataacacaaagactaattagggtgcttcacaaaagattgtagcatcgaaaaaattcctt |
17108117 |
T |
|
| Q |
303 |
tgaagaagctct |
314 |
Q |
| |
|
|||||||||| |
|
|
| T |
17108118 |
ctaagaagctct |
17108129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University