View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3942_high_6 (Length: 266)
Name: NF3942_high_6
Description: NF3942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3942_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 51530751 - 51530573
Alignment:
| Q |
1 |
ctttgtaatccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactcagccatgttcttagatcagagcttagatttccagtactgttat |
100 |
Q |
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| T |
51530751 |
ctttgtaatccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactgagccatgttcttagatcagagcttagatttccagtactgttat |
51530652 |
T |
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| Q |
101 |
tcttccctgtacagaagattttatagcacatttagtttatttacaaattattatatgtgtgaacgtattagtttcagta |
179 |
Q |
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| T |
51530651 |
tcttccctgtacagaggattttatagcacatttagtttatttacaaattattatatgtgtcaacgtattagttttagta |
51530573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 51524558 - 51524458
Alignment:
| Q |
10 |
ccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactcagccatgttcttagatcagagcttagatttccagtactgttattcttccctg |
109 |
Q |
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|||| ||||||||||| ||| ||||||| || |||||||||||||||||||||||| ||||||||| || |||| ||||| || ||||||| |||| ||| |
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| T |
51524558 |
ccttctaatccttctatacatgtgtctggatacacaagaacagcactcagccatgtccttagatcacagtttagttttcctgtgctgttatccttctctg |
51524459 |
T |
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| Q |
110 |
t |
110 |
Q |
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| T |
51524458 |
t |
51524458 |
T |
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