View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3942_high_7 (Length: 265)
Name: NF3942_high_7
Description: NF3942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3942_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 8533859 - 8533611
Alignment:
| Q |
1 |
tcaatgttgagggccctgcacggagtagtggaaaataaatggcttagatttcattgaactctcaaattacatgagagaatctgctcccagttggacgcat |
100 |
Q |
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| T |
8533859 |
tcaatgttgaaggctccgcacggagtagtggaaaataaatggcttagatctcattgaactctcaagttacatgagagaatctgctcccagttggacgcat |
8533760 |
T |
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| Q |
101 |
ttatttgagtttgaattaaggatccccaagtgatatatatacctgagtttaagtggtatttaccaacactttttgttgatttggtatagttgttcattga |
200 |
Q |
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| T |
8533759 |
tcatttgagtttgaattaaggatcccccagtgatatatatacctgagtttaagtggtatttatcaacacttttagttgatttggtatagttgttcattga |
8533660 |
T |
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| Q |
201 |
cataaatatttaggacacaatataaaatacactatttcatttcacctct |
249 |
Q |
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| T |
8533659 |
cataaatatttaggatacaatataaaatacactatttcatttcacctct |
8533611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 8553247 - 8553193
Alignment:
| Q |
193 |
ttcattgacataaatatttaggacacaatataaaatacactatttcatttcacctct |
249 |
Q |
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| T |
8553247 |
ttcattgacataaatatctaggacac--tataaaatatactatttcatttcatctct |
8553193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34639652 - 34639606
Alignment:
| Q |
1 |
tcaatgttgagggccctgcacggagtagtggaaaataaatggcttag |
47 |
Q |
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| T |
34639652 |
tcaatgttgtgggccctacatggagtagtgaaaaataaatggcttag |
34639606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 23862057 - 23861990
Alignment:
| Q |
22 |
ggagtagtggaaaataaatggcttagatttcattgaactctcaaattacatgagagaatctgctccca |
89 |
Q |
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| T |
23862057 |
ggagtagtagaaaataaatggcttagatctcattggactctccgatcacaggagagaatcagctccca |
23861990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31228460 - 31228541
Alignment:
| Q |
1 |
tcaatgttgagggccctgcacggagtagtggaaaataaatggcttagatttcattgaactctcaaattacatgagagaatct |
82 |
Q |
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|||| ||||||||| | || |||||||| ||||||||||||||||||| ||| || |||||| ||| ||| |||||||||| |
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| T |
31228460 |
tcaacgttgagggctccacatggagtagtagaaaataaatggcttagatctcactggactctccaatcacaagagagaatct |
31228541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 34313161 - 34313236
Alignment:
| Q |
12 |
ggccctgcacggagtagtggaaaataaatggcttagatttcattgaactctcaaattacatgagagaatctgctcc |
87 |
Q |
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| T |
34313161 |
ggccctgcatggagtgatggaaaataaatgacttagattttattggactcttcaattatagaagagaatctgctcc |
34313236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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