View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3942_low_1 (Length: 713)

Name: NF3942_low_1
Description: NF3942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3942_low_1
NF3942_low_1
[»] chr7 (8 HSPs)
chr7 (365-694)||(876548-876877)
chr7 (365-694)||(1237825-1238154)
chr7 (200-363)||(38795315-38795477)
chr7 (266-364)||(27619247-27619345)
chr7 (267-365)||(28106871-28106969)
chr7 (269-356)||(9792510-9792597)
chr7 (287-364)||(12487919-12487996)
chr7 (269-330)||(39512213-39512274)
[»] chr4 (14 HSPs)
chr4 (147-364)||(4528448-4528665)
chr4 (147-365)||(15209399-15209618)
chr4 (144-316)||(15214784-15214957)
chr4 (266-364)||(55465674-55465772)
chr4 (285-364)||(23201712-23201791)
chr4 (12-81)||(15209684-15209753)
chr4 (12-81)||(15215020-15215089)
chr4 (177-317)||(31430315-31430459)
chr4 (276-364)||(44742519-44742607)
chr4 (280-364)||(41396563-41396647)
chr4 (276-352)||(13089638-13089714)
chr4 (312-364)||(31430598-31430650)
chr4 (177-245)||(23201614-23201683)
chr4 (287-364)||(1106016-1106092)
[»] chr3 (7 HSPs)
chr3 (145-364)||(25704749-25704967)
chr3 (145-365)||(8100228-8100448)
chr3 (14-81)||(25705031-25705098)
chr3 (276-357)||(36330665-36330746)
chr3 (280-364)||(25163895-25163979)
chr3 (286-336)||(3586460-3586511)
chr3 (266-364)||(46104957-46105056)
[»] chr1 (5 HSPs)
chr1 (145-364)||(32603120-32603339)
chr1 (180-364)||(6249796-6249978)
chr1 (269-364)||(6579798-6579893)
chr1 (269-364)||(17010857-17010952)
chr1 (298-364)||(38833478-38833544)
[»] scaffold0049 (1 HSPs)
scaffold0049 (174-364)||(13315-13504)
[»] chr8 (6 HSPs)
chr8 (145-364)||(15588104-15588323)
chr8 (266-364)||(24970854-24970952)
chr8 (280-364)||(9452577-9452661)
chr8 (281-364)||(30087482-30087565)
chr8 (276-337)||(24955099-24955160)
chr8 (294-357)||(19792837-19792900)
[»] chr2 (3 HSPs)
chr2 (200-364)||(10256882-10257045)
chr2 (145-196)||(21025016-21025068)
chr2 (281-352)||(45297621-45297692)
[»] chr5 (5 HSPs)
chr5 (177-363)||(31956296-31956486)
chr5 (276-364)||(3068589-3068677)
chr5 (269-364)||(29963886-29963981)
chr5 (269-364)||(30010817-30010912)
chr5 (287-364)||(31955548-31955625)
[»] chr6 (4 HSPs)
chr6 (269-368)||(26339376-26339475)
chr6 (280-365)||(1222562-1222647)
chr6 (185-364)||(15669479-15669657)
chr6 (190-321)||(14637810-14637940)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-166; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 365 - 694
Target Start/End: Original strand, 876548 - 876877
Alignment:
Q  365 actagcatattttttaagtcgttataaactttacaactagtctttgtaccaatttgttattctctacgagttatctaaactagttactctttgtccctta 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  876548 actagcatattttttaagtcgttataaactttacaactagtctttgtaccaatttgttattctctacaagttatctaaactagttactctttgtccctta 876647  T
Q  465 ttaggactaaaaacataattctgtaattattggactgaaaagttaatacagaaactnnnnnnnttgagataactattgtaaatatatatttaagcatgta 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||    
T  876648 ttaggactaaaaacataattctgtaattattggactgaaaagttaatacagaaactaaaaaaattgaaataactattgtaaatatatatttaagcatgta 876747  T
Q  565 ttttaatgaccattataccttttcaaataattaagataacttgatgaaagttaggaagtcaaactttcctagtagtaacccaaaaaatgcatcacatgtg 664  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  876748 tcttaatgaccattataccttttcaaataattaagataacttgatgaaagttaggaagtcaaactttcctagtagtaacccaaaaaatgcatcacatgtg 876847  T
Q  665 ggagaaaataaatcaaatagatgatgttag 694  Q
    ||||||||||||||||||||||||||||||    
T  876848 ggagaaaataaatcaaatagatgatgttag 876877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 365 - 694
Target Start/End: Original strand, 1237825 - 1238154
Alignment:
Q  365 actagcatattttttaagtcgttataaactttacaactagtctttgtaccaatttgttattctctacgagttatctaaactagttactctttgtccctta 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1237825 actagcatattttttaagtcgttataaactttacaactagtctttgtaccaatttgttattctctacaagttatctaaactagttactctttgtccctta 1237924  T
Q  465 ttaggactaaaaacataattctgtaattattggactgaaaagttaatacagaaactnnnnnnnttgagataactattgtaaatatatatttaagcatgta 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||    
T  1237925 ttaggactaaaaacataattctgtaattattggactgaaaagttaatacagaaactaaaaaaattgaaataactattgtaaatatatatttaagcatgta 1238024  T
Q  565 ttttaatgaccattataccttttcaaataattaagataacttgatgaaagttaggaagtcaaactttcctagtagtaacccaaaaaatgcatcacatgtg 664  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238025 tcttaatgaccattataccttttcaaataattaagataacttgatgaaagttaggaagtcaaactttcctagtagtaacccaaaaaatgcatcacatgtg 1238124  T
Q  665 ggagaaaataaatcaaatagatgatgttag 694  Q
    ||||||||||||||||||||||||||||||    
T  1238125 ggagaaaataaatcaaatagatgatgttag 1238154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 200 - 363
Target Start/End: Complemental strand, 38795477 - 38795315
Alignment:
Q  200 caaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattg 299  Q
    |||||||||||||||| ||||||||||  ||||||||| ||||||||||| ||| |||        |||||||||||||||||||||||||||||||||     
T  38795477 caaaagttcaattttatatcttattttggaagtcacttttatttgatttcattc-tttaaaaaaaagatacttctattattaagaactttattaaaatta 38795379  T
Q  300 tgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgct 363  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  38795378 tgtttggccctacttctccttagaagtagaagagaagtggaaaataaggagggccaaacatgct 38795315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 27619345 - 27619247
Alignment:
Q  266 gatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||| |||| |||||||||||    
T  27619345 gatacttctattattaagaactttattaaaattatgtttggccctacttctccttagaagtagaagagaaatggaaaataagaagggccaaacatgctc 27619247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 267 - 365
Target Start/End: Complemental strand, 28106969 - 28106871
Alignment:
Q  267 atacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctca 365  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||| |||| ||| |||||||||||||||||||||||||  |||||| |||||    
T  28106969 atacttctattattaagaactttattaaaattatgtttggttctacttcttcttagaagtagaagagaagtggaaaataaggaggaccaaacacgctca 28106871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 9792510 - 9792597
Alignment:
Q  269 acttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaa 356  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||| |||||||| | |||| |||||||||||||||||||||||    
T  9792510 acttcttttattaagagctttattaaaattgtgtttggccccacttcttcttaaaagtaaaagataagtggaaaataaggagggtcaa 9792597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 12487996 - 12487919
Alignment:
Q  287 tttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    ||||||||||||||||| | |||||||||| |||| |||   |||| |||| |||||||||||||| |||||||||||    
T  12487996 tttattaaaattgtgttcgaccctacttcttcttagaagtgaaagataagtagaaaataaggagggccaaacatgctc 12487919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 39512213 - 39512274
Alignment:
Q  269 acttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaa 330  Q
    |||||| ||| ||||| |||| ||||||||||||||||||||||||||| ||| ||| ||||    
T  39512213 acttcttttaataagagcttttttaaaattgtgtttggccctacttctctttagaagtagaa 39512274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 3e-90; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 147 - 364
Target Start/End: Original strand, 4528448 - 4528665
Alignment:
Q  147 gtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgat 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4528448 gtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggccaaaagttcaattttacatcttattttaaaagtcacttctatttgat 4528547  T
Q  247 ttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataa 346  Q
    |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  4528548 ttctttccttccaaaaaaagatacttctattattaagaactttattaaaattgtgtttggccctacttcttcttgaaagtagaagagaagtggaaaataa 4528647  T
Q  347 ggagggtcaaacatgctc 364  Q
    |||||| ||| |||||||    
T  4528648 ggagggccaagcatgctc 4528665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 147 - 365
Target Start/End: Complemental strand, 15209618 - 15209399
Alignment:
Q  147 gtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgat 246  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  15209618 gtttctgcgggaatcgatgtgtgggcagtgaatggtagctccgaaaagttggccaaaagttcaattttacatcttattttaaaagtcacttctatttcat 15209519  T
Q  247 ttctttcctttc-nnnnnnngatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaata 345  Q
    |||||||||| |        |||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||  |||||||||||||||||||    
T  15209518 ttctttccttccaaaaaaaagatacttcaattattaagaactttattaaaattgtgttgggtcatacttctccttaaaactagaagagaagtggaaaata 15209419  T
Q  346 aggagggtcaaacatgctca 365  Q
    ||||||  ||||||||||||    
T  15209418 aggaggaccaaacatgctca 15209399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 144 - 316
Target Start/End: Complemental strand, 15214957 - 15214784
Alignment:
Q  144 ctggtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctattt 243  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  15214957 ctggtttctgcgggaatcgatgtgtgggcagtgaacggtagctccgaaaagttggccaaaagttcaattttacatcttattttaaaagtcacttttattt 15214858  T
Q  244 gatttctttcctttc-nnnnnnngatacttctattattaagaactttattaaaattgtgtttggccctacttct 316  Q
     |||||||||||| |        |||||||| ||||||||||||||||||||||||||||| || |||||||||    
T  15214857 catttctttccttccaaaaaaaagatacttcaattattaagaactttattaaaattgtgttgggtcctacttct 15214784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 55465772 - 55465674
Alignment:
Q  266 gatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||||||||    
T  55465772 gatacttctattattaagaattttattaaaattgtgtttggctctacttctccttgaaagtataagagaagtggaaaataaggagggtcaaacatgctc 55465674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 23201712 - 23201791
Alignment:
Q  285 actttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  23201712 actttattaaaattatgtttggccctacttctccttagaagtagaagagaagtggaaaataaggagggccaaacatgctc 23201791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 15209753 - 15209684
Alignment:
Q  12 agcagagaatggatggaggagaaagttgaatcagaatatatacaattaggttatgtgttttagcgggtat 81  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  15209753 agcagagaatggatggaggagaaagttggatcagaatatatacaattaggttatgtgttttggcgggtat 15209684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 15215089 - 15215020
Alignment:
Q  12 agcagagaatggatggaggagaaagttgaatcagaatatatacaattaggttatgtgttttagcgggtat 81  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  15215089 agcagagaatggatggaggagaaagttagatcagaatatatacaattaggttatgtgttttggcgggtat 15215020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 31430315 - 31430459
Alignment:
Q  177 aacagtagctccgaa-aagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnn---gatactt 272  Q
    ||||||||||||||| |||||   |||||||||||||||| ||||||||||  ||||||||| ||||||||||| || ||||           |||||||    
T  31430315 aacagtagctccgaagaagttatgcaaaagttcaattttatatcttattttggaagtcacttttatttgatttcattactttaaaaaaaaaaagatactt 31430414  T
Q  273 ctattattaagaactttattaaaattgtgtttggccctacttctc 317  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  31430415 ctattattaagaactttattaaaattatgtttggccctacttctc 31430459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 44742607 - 44742519
Alignment:
Q  276 ttattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    ||||||||| |||||||||||||||||||||||| |||||| |||| ||| |||||||||||| |||||||| |||| |||||||||||    
T  44742607 ttattaagagctttattaaaattgtgtttggccccacttcttcttagaagtagaagagaagtgaaaaataagtagggccaaacatgctc 44742519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 41396647 - 41396563
Alignment:
Q  280 taagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||  | || | |||| |||||||||||||| |||||||||||    
T  41396647 taagagcttttttaaaattgtgtttggccctacttctccttaaaaataaaaaataagtagaaaataaggagggccaaacatgctc 41396563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 13089714 - 13089638
Alignment:
Q  276 ttattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggaggg 352  Q
    ||||||||| |||| ||||||||||||||| ||| |||||| |||| ||| |||||||||||| |||||||| ||||    
T  13089714 ttattaagagctttgttaaaattgtgtttgaccccacttcttcttagaagtagaagagaagtgaaaaataagtaggg 13089638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 31430598 - 31430650
Alignment:
Q  312 cttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  31430598 cttctccttagaagtagaagagaagtggaaaataaggagggccaaacatgctc 31430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 23201614 - 23201683
Alignment:
Q  177 aacagtagctccgaaaa-gttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttga 245  Q
    ||||||||||||||||| |||   |||||||||||||||| ||||||||||  ||||||||| |||||||    
T  23201614 aacagtagctccgaaaaagttatgcaaaagttcaattttatatcttattttggaagtcacttttatttga 23201683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 1106092 - 1106016
Alignment:
Q  287 tttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||||||||||||    ||||||||||||||||  ||||| |||| ||||||||| ||||  ||||||||||    
T  1106092 tttattaaaattgtgtttgatgttacttctccttaaaagtggaaga-aagtagaaaataagaagggctaaacatgctc 1106016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 4e-89; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 145 - 364
Target Start/End: Complemental strand, 25704967 - 25704749
Alignment:
Q  145 tggtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttg 244  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  25704967 tggtttctgcgggaatcgatgtgtgggcagtgaacaatagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagttgcttctatttg 25704868  T
Q  245 atttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaat 344  Q
    |||||||||| |||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  25704867 atttctttcc-ttccaaaaaagatacttctattattaataactttattaaaattgtgtttggccctacttctccttaaaagtagaagagaagtgaaaaat 25704769  T
Q  345 aaggagggtcaaacatgctc 364  Q
    ||||||||||||||||||||    
T  25704768 aaggagggtcaaacatgctc 25704749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 145 - 365
Target Start/End: Original strand, 8100228 - 8100448
Alignment:
Q  145 tggtttctgcgggaatcgatgtgtgggca-gtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctattt 243  Q
    |||||| |||||||||||||||  ||||  ||||| | ||||||||||||||||   | |||||||||||||||||||||||||||||||| ||||||||    
T  8100228 tggtttgtgcgggaatcgatgttggggcgtgtgaataatagctccgaaaagttgtctagaagttcaattttacatcttattttaaaagtcatttctattt 8100327  T
Q  244 gatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaa 343  Q
    |||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||    
T  8100328 gatttctttcctttcaaaaaa-gatacttctcttattaagaactttattaaaattgtgtttggctctacttctccttgaaagtagaagagaagtgaaaaa 8100426  T
Q  344 taaggagggtcaaacatgctca 365  Q
    |||| |||| ||||||||||||    
T  8100427 taagcagggccaaacatgctca 8100448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 25705098 - 25705031
Alignment:
Q  14 cagagaatggatggaggagaaagttgaatcagaatatatacaattaggttatgtgttttagcgggtat 81  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  25705098 cagagaatgaatggaggagaaagttggatcagaatatatacaattaggttatgtgttttggcgggtat 25705031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 36330746 - 36330665
Alignment:
Q  276 ttattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaa 357  Q
    ||||||| | |||||||||||||||||||| ||| |||||| |||| ||| ||||||||||||||||||||| |||| ||||    
T  36330746 ttattaaaagctttattaaaattgtgtttgaccccacttcttcttagaagtagaagagaagtggaaaataagtagggccaaa 36330665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 25163979 - 25163895
Alignment:
Q  280 taagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    ||||| |||| || |||||||||||||||||||||||||||| ||| | || | |||| |||||||||||||| |||||||||||    
T  25163979 taagagctttttttaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 25163895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 336
Target Start/End: Complemental strand, 3586511 - 3586460
Alignment:
Q  286 ctttattaaaattgtgtttggccctac-ttctccttaaaagcagaagagaag 336  Q
    ||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||    
T  3586511 ctttattaaaaatgtgtttggccctactttctccttataaggagaagagaag 3586460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 46105056 - 46104957
Alignment:
Q  266 gatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaag-cagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    ||||||||| ||  |||||  ||| |||||||||||||||| |||||||||||||| |||  | || | |||| ||||||||| ||| ||||||||||||    
T  46105056 gatacttcttttgataagagtttttttaaaattgtgtttggtcctacttctccttagaagtaaaaaaataagtagaaaataagaaggatcaaacatgctc 46104957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 8e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 145 - 364
Target Start/End: Complemental strand, 32603339 - 32603120
Alignment:
Q  145 tggtttctgcgggaatcgatgtgtgggca-gtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctattt 243  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||   | || ||||||||||||||||||||||||||||| ||||||||    
T  32603339 tggtttctgcgggaatcgatgtgcgggcctgtgaacagtagctccgaaaagttgtctagaaattcaattttacatcttattttaaaagtcatttctattt 32603240  T
Q  244 gatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaa 343  Q
    ||||||||||||| |       ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  32603239 gatttctttcctt-ccaaaaaagatacttctcttattaagaactttattaaaattgtgtttggccctacttctccttgaaagtagaagagaagtgaaaaa 32603141  T
Q  344 taaggagggtcaaacatgctc 364  Q
    |||| |||| |||||||||||    
T  32603140 taagcagggccaaacatgctc 32603120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 180 - 364
Target Start/End: Original strand, 6249796 - 6249978
Alignment:
Q  180 agtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttctattat 279  Q
    ||||||||||||||||||   | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |       ||||||||| ||||    
T  6249796 agtagctccgaaaagttgtctagaagttcaattttacatcttattttaaaagtcatttctatttgatttctttcctt-ctaaaaaagatacttcttttat 6249894  T
Q  280 taagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||||||||||||||||||| || ||||||||||| |||| | || ||||||| |||||||| ||||||||||||||||    
T  6249895 taagaactttattaaaattgtgtttgaccatacttctccttgaaagta-aaaagaagtgaaaaataagcagggtcaaacatgctc 6249978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 6579798 - 6579893
Alignment:
Q  269 acttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||  ||||| ||| |||||| |||||||||||||| |||| |||||||||||    
T  6579798 acttcttttattaagagctttattaaaattgtgtttggccccactttaccttagaagtagaagataagtggaaaataagcagggccaaacatgctc 6579893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 17010952 - 17010857
Alignment:
Q  269 acttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||| ||||||||||||| |||||||||||||||||||| |||||| |||| ||| |||||| ||||| ||| |||| |||| |||||||||||    
T  17010952 acttcttttattaagaacttaattaaaattgtgtttggccccacttcttcttagaagtagaagataagtgaaaattaagcagggccaaacatgctc 17010857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 38833544 - 38833478
Alignment:
Q  298 tgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||||| |||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  38833544 tgtgtttggccccacttcttcttagaagtagaagagaagtggaaaataagtagggtcaaacatgctc 38833478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 174 - 364
Target Start/End: Original strand, 13315 - 13504
Alignment:
Q  174 gtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttc 273  Q
    ||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||       ||||||||    
T  13315 gtgaacagtagttccgaaaagttgtttagaagttcaattttacatcttattttaaaagtcatttctatttgatttctttcctttcaaaaaa-gatacttc 13413  T
Q  274 tattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |||| |||| |||||||||||    
T  13414 tcttattaagaactttattaaaattgtgtttggccctacttctccttgaaagtagaagagaagtgaaaactaagcagggccaaacatgctc 13504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 145 - 364
Target Start/End: Original strand, 15588104 - 15588323
Alignment:
Q  145 tggtttctgcgggaatcgatgtgtgggca-gtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctattt 243  Q
    |||||||||||||||||||||   ||||  ||||||||||| ||||||||||||   | ||||| |||||||||||||||||||||||||| ||||||||    
T  15588104 tggtttctgcgggaatcgatgctggggcgtgtgaacagtagttccgaaaagttgtctagaagtttaattttacatcttattttaaaagtcatttctattt 15588203  T
Q  244 gatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaa 343  Q
    ||||||||||||||        ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  15588204 gatttctttccttt-taaaaaagatacttctcttattaagaactttattaaaattgtgtttgaccctacttctccttgaaagtagaagagaagtgaaaaa 15588302  T
Q  344 taaggagggtcaaacatgctc 364  Q
    |||| ||||||||||||||||    
T  15588303 taagcagggtcaaacatgctc 15588323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 24970952 - 24970854
Alignment:
Q  266 gatacttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||| ||||||||||||| |||||||||||    
T  24970952 gatacttctattattaagaactttattaaaattatgtttggccctacttctctttagaagtagaagagaagtgaaaaataaggagggccaaacatgctc 24970854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 9452661 - 9452577
Alignment:
Q  280 taagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    ||||| |||| ||||||||||||||||||||||||||||||| ||| | || | ||||||||||||||||||| |||||||||||    
T  9452661 taagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtggaaaataaggagggccaaacatgctc 9452577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 30087482 - 30087565
Alignment:
Q  281 aagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||  |||||||||||||||||||||||||||||||||   ||| | |||| |||||| ||||||| |||||||||||    
T  30087482 aagaactttcctaaaattgtgtttggccctacttctccttaaaattggaatataagtagaaaatcaggagggccaaacatgctc 30087565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 24955160 - 24955099
Alignment:
Q  276 ttattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagt 337  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||||| |||| ||||||    
T  24955160 ttattaagagctttattaaaattatgtttggccctacttcttcttaaaagtagaatagaagt 24955099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 19792900 - 19792837
Alignment:
Q  294 aaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaa 357  Q
    |||||||||||||||||||||||||||||||   ||||| |||| |||||||||||||| ||||    
T  19792900 aaattgtgtttggccctacttctccttaaaattggaagataagtagaaaataaggagggacaaa 19792837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 200 - 364
Target Start/End: Complemental strand, 10257045 - 10256882
Alignment:
Q  200 caaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattg 299  Q
    |||||||||||||||| ||||||||||  ||||||||| ||||||||||| ||| |||        |||||||||||||||||||||||||||||||||     
T  10257045 caaaagttcaattttatatcttattttggaagtcacttttatttgatttcattc-tttaaaaaaaagatacttctattattaagaactttattaaaatta 10256947  T
Q  300 tgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||||||||||||||| ||| |||||||||  ||||||||||||||| |||||||||||    
T  10256946 tgtttggccctacttctccttagaagtagaagagaacgggaaaataaggagggccaaacatgctc 10256882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 21025016 - 21025068
Alignment:
Q  145 tggtttctgcgggaatcgatgtgtggg-cagtgaacagtagctccgaaaagtt 196  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  21025016 tggtttctgtgggaatcgatgtgtggggcagtgaacagtagctccgaaaagtt 21025068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 45297621 - 45297692
Alignment:
Q  281 aagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggaggg 352  Q
    |||| |||||||||||||||||||||||||||||||||||| |||  | ||| |||| |||||||| |||||    
T  45297621 aagagctttattaaaattgtgtttggccctacttctccttagaagtggtagataagtagaaaataacgaggg 45297692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 177 - 363
Target Start/End: Original strand, 31956296 - 31956486
Alignment:
Q  177 aacagtagctccgaa-aagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnn---gatactt 272  Q
    ||||||||||||||| |||||   |||||||||||||||| ||||||||||  ||||||||| ||||||||||| ||| ||            || ||||    
T  31956296 aacagtagctccgaagaagttacgcaaaagttcaattttatatcttatttttgaagtcacttttatttgatttccttctttaaaaaaaaaaaagaaactt 31956395  T
Q  273 ctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgct 363  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||    
T  31956396 ctattattaagaactttattaaaattatgtttggccctacttctccttagaagtagaagagaagcggaaaataaggagggccaaacatgct 31956486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 3068589 - 3068677
Alignment:
Q  276 ttattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||| |||| ||||||||||||||||||||||||||||| ||  || |||  |||||||||| |||||||||||||| |||||||||||    
T  3068589 ttataaagagctttattaaaattgtgtttggccctacttatctgtagaagtggaagagaagtagaaaataaggagggccaaacatgctc 3068677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 29963981 - 29963886
Alignment:
Q  269 acttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||||||||| |||||| |||||| |||||||||| ||||||| ||| ||| | |||| |||||| ||||||| |||| |||||||||||    
T  29963981 acttctattattaagagctttatcaaaattatgtttggccccacttctctttagaagtaaaagataagtggcaaataagcagggccaaacatgctc 29963886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 30010817 - 30010912
Alignment:
Q  269 acttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||||||||| |||||| |||||| |||||||||| ||||||| ||| ||| | |||| |||||| ||||||| |||| |||||||||||    
T  30010817 acttctattattaagagctttatcaaaattatgtttggccccacttctctttagaagtaaaagataagtggcaaataagcagggccaaacatgctc 30010912  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 31955625 - 31955548
Alignment:
Q  287 tttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    |||||||||||| ||||| |||| ||||||||||| ||  ||||||||||||||||||||  |||| |||||||||||    
T  31955625 tttattaaaattatgtttagcccaacttctccttagaaatagaagagaagtggaaaataaaaagggccaaacatgctc 31955548  T

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Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 269 - 368
Target Start/End: Original strand, 26339376 - 26339475
Alignment:
Q  269 acttctattattaagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctcacta 368  Q
    |||||||||||||||| |||||| |||||| |||||||||| ||||||| ||||||| | |||| || ||||||||||| ||||||||||||||| ||||    
T  26339376 acttctattattaagagctttatcaaaattatgtttggccccacttctctttaaaagtaaaagataaatggaaaataagcagggtcaaacatgctaacta 26339475  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 1222647 - 1222562
Alignment:
Q  280 taagaactttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctca 365  Q
    ||||| |||| ||||||||||||||||||||||||||| ||| ||| | || | |||| ||||||||| |||| ||||||||||||    
T  1222647 taagagcttttttaaaattgtgtttggccctacttctctttataagtaaaaaataagtagaaaataagaagggacaaacatgctca 1222562  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 364
Target Start/End: Original strand, 15669479 - 15669657
Alignment:
Q  185 ctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttctattattaaga 284  Q
    |||||| |||||| || |||||||| |||  ||||||||||| |||||||||| ||||  ||||| ||| || |       || |||| | |||||||||    
T  15669479 ctccgagaagttgctccaaagttcattttctcatcttatttttaaagtcacttttattacatttccttcattgcaaaaaa-gacacttattttattaaga 15669577  T
Q  285 actttattaaaattgtgtttggccctacttctccttaaaagcagaagagaagtggaaaataaggagggtcaaacatgctc 364  Q
    | || |||||||||||||||| ||| |||||| |||| ||| |||||| ||||||||| | || |||| |||||||||||    
T  15669578 atttaattaaaattgtgtttgaccccacttcttcttagaagtagaagataagtggaaattgagtagggccaaacatgctc 15669657  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 14637810 - 14637940
Alignment:
Q  190 aaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttctattattaagaacttt 289  Q
    |||||||| || |||||||||||| |||||||||||| ||||||| || | || |||||| ||| |||        |  |||| | ||||||||||||||    
T  14637810 aaaagttgttctaaagttcaatttcacatcttatttttaaagtcatttttgttggatttccttc-tttacaaaaacgtcacttattttattaagaacttt 14637908  T
Q  290 attaaaattgtgtttggccctacttctcctta 321  Q
    | ||||||| |||||||||| |||||||||||    
T  14637909 actaaaattatgtttggccccacttctcctta 14637940  T

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