View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3942_low_2 (Length: 441)
Name: NF3942_low_2
Description: NF3942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3942_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 51531211 - 51530787
Alignment:
| Q |
17 |
aaataggtatgatactgtaaatgcaatcttaccaaaggtagctgttcggaaagtagtccaaccgtccacacgattccgactaccggagataatagtagca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51531211 |
aaataggtatgatactgtaaatgcaatcttaccaaaggtagctgatcggaaagtagtccaaccatccacacgattccgactaccggagataatagtagca |
51531112 |
T |
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| Q |
117 |
tccataccttcaccaatcatcataatattccatttcttcctatcaatctcaacattctcaacatatacaccttttttcacatatataacatatcttctca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51531111 |
tccataccttcaccaatcatcataatattccatttcttcctatcaatctcaacattctcaacatatacaccttttttcacatatataacatatcttctca |
51531012 |
T |
|
| Q |
217 |
tgctgaatttaggtgctgccaatacggcatccatcaccgtagtgtagttcccactcccatcagccgccacaatagcatcagcagtcgtttcatttgcctc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51531011 |
tgctgaatttaggtgctgccaatacggcatccatcactgtagtgtagttcccactcccatcagccgccacaatagcatcagcagtcgtttcatttgcctc |
51530912 |
T |
|
| Q |
317 |
aaaaaacttcctgtctccgtagttaatccacgaaggaaatctatcttcggaggtagcagttgcaagttgatcgttgctgaggactacttcaaaaagattc |
416 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51530911 |
aaaaaacttcttgtctccgtcgttaatccacgaaggaaatctatcttcggaggtagcagttgcaagttgatcgttgctgaggactacttcaaaaagattc |
51530812 |
T |
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| Q |
417 |
ttcttcaccaatgacattacacgat |
441 |
Q |
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| T |
51530811 |
ttcttcaccaatgacaatacacgat |
51530787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 43 - 298
Target Start/End: Complemental strand, 51524989 - 51524734
Alignment:
| Q |
43 |
tcttaccaaaggtagctgttcggaaagtagtccaaccgtccacacgattccgactaccggagataatagtagcatccataccttcaccaatcatcataat |
142 |
Q |
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|||||||||||||||||| |||||||| ||| ||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||| ||| || |
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| T |
51524989 |
tcttaccaaaggtagctgaccggaaagttgtcgaaccgtccacataattccgactgccggagatgatagtagcatccatgccttcaccaatcaacatgat |
51524890 |
T |
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| Q |
143 |
attccatttcttcctatcaatctcaacattctcaacatatacaccttttttcacatatataacatatcttctcatgctgaatttaggtgctgccaatacg |
242 |
Q |
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||||||||||||| | | |||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||||||| || |||||||||| ||||| |
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| T |
51524889 |
attccatttcttcttcttaatctcaacattttcaacataaacaccttttttcacatatattacatatcttttcatgctgctttcaggtgctgccgatacg |
51524790 |
T |
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| Q |
243 |
gcatccatcaccgtagtgtagttcccactcccatcagccgccacaatagcatcagc |
298 |
Q |
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|||||||||||| ||| ||||| ||||| |||||||| ||||||| ||||||||| |
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| T |
51524789 |
gcatccatcaccttagcgtagtctccacttccatcagcagccacaacagcatcagc |
51524734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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