View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3942_low_3 (Length: 370)
Name: NF3942_low_3
Description: NF3942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3942_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 2517793 - 2517584
Alignment:
| Q |
1 |
gagtatgatatcaaggccttaagttatgatgttttcatgtgctaaatgactcctttctttgtttagtatctgctggctgtttggtcctacattctttttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517793 |
gagtatgatatcaaggccttaagttatgatgttttcatgtgctaaatgactcctttctttgtttagtatctgctggctgtttggtcctacattctttttc |
2517694 |
T |
|
| Q |
101 |
cgttttcttcttttgttcagcctgctttggtttggaaaagaaccaatattgaatgagtcatgtacttattaggaactgaaagttcattgcttttatataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517693 |
cgttttcttcttttgttcagcctgctttggtttggaaaagaaccaatattgaatgagtcatgtacttattaggaactgaaagttcattgcttttatataa |
2517594 |
T |
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| Q |
201 |
ttttcccatc |
210 |
Q |
| |
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| |||||||| |
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| T |
2517593 |
tcttcccatc |
2517584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 2517474 - 2517424
Alignment:
| Q |
320 |
agcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc |
370 |
Q |
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| T |
2517474 |
agcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc |
2517424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 2506497 - 2506451
Alignment:
| Q |
324 |
caggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc |
370 |
Q |
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| T |
2506497 |
caggtatgccaggaatgactgcttatgctggtttctttgaagtaggc |
2506451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 1458972 - 1459019
Alignment:
| Q |
323 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc |
370 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
1458972 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggc |
1459019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 2428679 - 2428726
Alignment:
| Q |
323 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc |
370 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
2428679 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggc |
2428726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 2513111 - 2513064
Alignment:
| Q |
323 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc |
370 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
2513111 |
acaggtatgccaggaatgactgcttattctggtttctttgaagtaggc |
2513064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 2497772 - 2497724
Alignment:
| Q |
322 |
cacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc |
370 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||| ||||| |
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|
| T |
2497772 |
cacaggtatgccaggaataactgcttatgctggtttctttgaactaggc |
2497724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 2435046 - 2435093
Alignment:
| Q |
323 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc |
370 |
Q |
| |
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||||||||||| |||||||| || |||||||||||||||||| ||||| |
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|
| T |
2435046 |
acaggtatgccgggaatgactgcatatgctggtttctttgaattaggc |
2435093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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