View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3942_low_4 (Length: 355)
Name: NF3942_low_4
Description: NF3942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3942_low_4 |
 | |
|
| [»] scaffold0179 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 893434 - 893309
Alignment:
| Q |
116 |
gaagtacggatgagagccgctacaatnnnnnnn-gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
893434 |
gaagtacggatgagagccgctacaataaaaaaaagacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaa |
893335 |
T |
|
| Q |
215 |
cagtgaaatagcagttgacatgtacc |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
893334 |
cagtgaaatagcagttgacatgtacc |
893309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 23974 - 24082
Alignment:
| Q |
149 |
gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaacagtgaaatagcagttgacatgtaccatggtgta |
248 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
23974 |
gacgggagaaaagagagtaaaggttgtgatggaaacggtgcatcaaaccgacgcaaggccaacaaaaagtgaaagagcagttgacatgtaccatggtgta |
24073 |
T |
|
| Q |
249 |
ggcaggacc |
257 |
Q |
| |
|
||||||||| |
|
|
| T |
24074 |
ggcaggacc |
24082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 51092895 - 51092947
Alignment:
| Q |
157 |
aaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggcca |
209 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
51092895 |
aaaagagatgaaaggttgtgatggaaacagtgcatcaggccggcgcgaggcca |
51092947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University