View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3942_low_6 (Length: 330)
Name: NF3942_low_6
Description: NF3942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3942_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 4864564 - 4864268
Alignment:
| Q |
16 |
attacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4864564 |
attacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagc |
4864465 |
T |
|
| Q |
116 |
taaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4864464 |
taaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctata |
4864365 |
T |
|
| Q |
216 |
ttacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactaccaagttcttaacgacaaagcgttagagacggtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4864364 |
ttacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacgaactaccaagttcttaacgacaaagcgttagagacggtt |
4864268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 4696647 - 4696939
Alignment:
| Q |
17 |
ttacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | || | |||| ||||||||||||||||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
4696647 |
ttacccttcttaaaaacttcaacccttctctttggttctatcatgatgacgaaaaaatcaccaaagaatattgcattcaaaccaaaccaaatgagaagtt |
4696746 |
T |
|
| Q |
117 |
aaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatat |
216 |
Q |
| |
|
|||||||||||||||||| || || ||||| || ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
4696747 |
aaacataactttcattcc---cagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatgccttcttttctctat |
4696843 |
T |
|
| Q |
217 |
tacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactaccaagttcttaacgacaaagcgttagagacggtt |
312 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696844 |
tacacaaacctcagtgacccaaaatatcatttgatatcacttgacttagacaacagggactaccaagttcttaacgacaaagcgttagagacggtt |
4696939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 66 - 299
Target Start/End: Original strand, 4711578 - 4711808
Alignment:
| Q |
66 |
ggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttat |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || || |||||||| |||||||||||| |
|
|
| T |
4711578 |
ggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttat |
4711674 |
T |
|
| Q |
166 |
tatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttg |
265 |
Q |
| |
|
||||| |||||||| ||||| ||| | |||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
4711675 |
tatgctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttg |
4711774 |
T |
|
| Q |
266 |
acaacacggactaccaagttcttaacgacaaagc |
299 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||| |
|
|
| T |
4711775 |
acaacacggaataccaaattcataacgacaaagc |
4711808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 4654134 - 4653883
Alignment:
| Q |
17 |
ttacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagct |
116 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| || || | ||| ||||||| |
|
|
| T |
4654134 |
ttacacttcttaaaaacttcaatccttcactttggattcatgatgatggggaaacaatcaccaaagaatattgcatccaagtccaaccgaataagaagct |
4654035 |
T |
|
| Q |
117 |
aaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatat |
216 |
Q |
| |
|
||||||||||||||||| |||| || | ||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
4654034 |
aaacataactttcattc---ccaacaacacaaaccattcaaatccttattatgctttcattaatggaattgaagttgtgtctatgccttcttttctctat |
4653938 |
T |
|
| Q |
217 |
tacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaaca |
271 |
Q |
| |
|
||| |||||||||||| |||||| ||| | || ||||||||||||| ||||||| |
|
|
| T |
4653937 |
tactcaaacctcaatgccccaaattatgacttcaaatcacttgactcagacaaca |
4653883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 4673345 - 4673062
Alignment:
| Q |
13 |
aatattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgaga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||| ||| || |||||||| | ||||||| |
|
|
| T |
4673345 |
aatattacccttcttaaaaacttcaaccctttcctttggattcatgattatgaggaaacaatcaccaaagaattttgtatccaaatcaagcccaatgaga |
4673246 |
T |
|
| Q |
113 |
agctaaacataactttcattccggccaataat-ataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttc |
211 |
Q |
| |
|
|||||||||||| ||||||||| || || || || |||||||| | | ||||| |||||||| ||||| ||| | ||||| ||||||||||||| |
|
|
| T |
4673245 |
agctaaacataaatttcattcc----aagcatcatgaacaaatcaaatgttaaatatgctttcattaacggaatcgaaattgtgtcaatgccttcttttc |
4673150 |
T |
|
| Q |
212 |
tatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactaccaagttcttaacgacaaagc |
299 |
Q |
| |
|
| |||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||| |||||| ||| |||||| ||||| |
|
|
| T |
4673149 |
tctattacacaaacctcagtgacccaaattatcatttgaaatcacttgacttagacaacacggaataccaaattcataacgaaaaagc |
4673062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 4637495 - 4637203
Alignment:
| Q |
17 |
ttacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagct |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | || |||| |||||||||||||||||||||||||| ||||||||| ||||||| ||| | |
|
|
| T |
4637495 |
ttacccttcttaaaaacttcaaccctttgctttggctctattttgatgacgaaaaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagtt |
4637396 |
T |
|
| Q |
117 |
aaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatat |
216 |
Q |
| |
|
|||||||||||||||||| || | ||||| ||||||||||||| |||||| || ||||| || || ||||| ||||| |||||||||||||| ||| |
|
|
| T |
4637395 |
aaacataactttcattcct---aacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgtgtcaatgccttcttttctctat |
4637299 |
T |
|
| Q |
217 |
tacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactaccaagttcttaacgacaaagcgttagagacggtt |
312 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| || |||||| || ||||||| |||| | ||| ||| |||||||| || |||| |||| |
|
|
| T |
4637298 |
tacacaaacctcaatgacccaaattactatttgaaaccagttgactcagagtacacggaataccgaattcataaagacaaagctttggagatggtt |
4637203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 4845469 - 4845720
Alignment:
| Q |
17 |
ttacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagct |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||| || | ||||||||| |||||||||||||||||||| |||||| |||||| |||||| |
|
|
| T |
4845469 |
ttacccttcttaaaaacttcagcccttcactttggcttcatgacgaggtggaaaaaattaccaaagaatattgcattcagatcaaaccaaatgggaagct |
4845568 |
T |
|
| Q |
117 |
aaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatat |
216 |
Q |
| |
|
||||||||||||| ||||| || || ||||| ||| ||||||| |||||| ||| |||| ||||| ||||| ||||| |||||||||||||| ||| |
|
|
| T |
4845569 |
aaacataactttctttccg---aacaacataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgccttcttttctctat |
4845665 |
T |
|
| Q |
217 |
tacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaaca |
271 |
Q |
| |
|
|||||||||| ||||| ||| |||||||| |||| | ||| ||||||||||| |
|
|
| T |
4845666 |
tacacaaacccagatgacttaaattattatttcaaattaattggctttgacaaca |
4845720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 4783291 - 4783584
Alignment:
| Q |
16 |
attacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| | |||| | | | ||| ||||||||||| ||| ||||||||| |||| ||||||| |
|
|
| T |
4783291 |
attacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagc |
4783390 |
T |
|
| Q |
116 |
taaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctata |
215 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| |||| | |||| |||||| |||||||| ||||| ||||| |||||||||||||||||||| || |
|
|
| T |
4783391 |
taaacataactttcattcc---caacaacacaaaccaattgattcctagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctcta |
4783487 |
T |
|
| Q |
216 |
ttacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactaccaagttcttaacgacaaagcgttagagacggtt |
312 |
Q |
| |
|
|||||||||||||| ||||| | | ||| | | || | || || |||||||||||||| || |||||||||||| ||||||| |||||||||||| |
|
|
| T |
4783488 |
ttacacaaacctcagtgaccaagattatcttatcaatttacctggttttgacaacacggattatcaagttcttaactacaaagctttagagacggtt |
4783584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 4815720 - 4816013
Alignment:
| Q |
16 |
attacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| | |||| | | | ||| ||||||||||| ||| ||||||||| |||| ||||||| |
|
|
| T |
4815720 |
attacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagc |
4815819 |
T |
|
| Q |
116 |
taaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctata |
215 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| |||| | |||| |||||| |||||||| ||||| ||||| |||||||||||||||||||| || |
|
|
| T |
4815820 |
taaacataactttcattcc---caacaacacaaaccaattgagtcctagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctcta |
4815916 |
T |
|
| Q |
216 |
ttacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactaccaagttcttaacgacaaagcgttagagacggtt |
312 |
Q |
| |
|
|||||||||||||| ||||| | | ||| | | || | || || | |||||||||||| ||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
4815917 |
ttacacaaacctcagtgaccaagattatcgtatcaagttacctggttctgacaacacggaataccaagttcttaacaacaaagctttagagacggtt |
4816013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 4644331 - 4644130
Alignment:
| Q |
19 |
acccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaa |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| | |||| | | || |||| |||||| |||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
4644331 |
acccttcttcaaaacttcaacccttcactttggcttcatcatgatgagaataatatcatcaaagagtattgcatccaaattaaaacaaatgagaagctaa |
4644232 |
T |
|
| Q |
119 |
acataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatatta |
218 |
Q |
| |
|
|||||||||||||||| | ||||||| | |||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
4644231 |
acataactttcattcccac---------------atcaaatgttagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctatta |
4644147 |
T |
|
| Q |
219 |
cacaaacctcaatgacc |
235 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
4644146 |
cacaaacctcagtgacc |
4644130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 4667406 - 4667331
Alignment:
| Q |
193 |
gtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgaca |
268 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| ||||||||| ||| |||||| || |||||||||||||| |
|
|
| T |
4667406 |
gtgtctatgccgtcttttctctattacacaaacctcagtgacccaaattatcatttgacattacttgactttgaca |
4667331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 4631513 - 4631451
Alignment:
| Q |
72 |
aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc |
134 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4631513 |
aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc |
4631451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 18925344 - 18925418
Alignment:
| Q |
165 |
ttatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaa |
239 |
Q |
| |
|
|||||| ||||| || ||||| || ||||||| |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
18925344 |
ttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaa |
18925418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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