View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_high_1 (Length: 914)

Name: NF3943_high_1
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_high_1
NF3943_high_1
[»] chr5 (11 HSPs)
chr5 (9-897)||(15807444-15808332)
chr5 (163-348)||(41859542-41859727)
chr5 (152-348)||(42629498-42629694)
chr5 (152-345)||(9575310-9575503)
chr5 (188-349)||(42840417-42840578)
chr5 (169-269)||(1040119-1040219)
chr5 (293-348)||(42637359-42637414)
chr5 (155-261)||(42637224-42637330)
chr5 (653-715)||(15815386-15815451)
chr5 (653-715)||(15831701-15831766)
chr5 (291-348)||(40545121-40545178)
[»] chr8 (2 HSPs)
chr8 (88-345)||(3367655-3367912)
chr8 (16-88)||(3367529-3367598)
[»] chr2 (3 HSPs)
chr2 (370-577)||(25287071-25287278)
chr2 (155-236)||(16921102-16921183)
chr2 (287-348)||(44937800-44937861)
[»] chr7 (2 HSPs)
chr7 (88-348)||(45866864-45867124)
chr7 (295-348)||(42446349-42446402)
[»] chr1 (1 HSPs)
chr1 (496-631)||(17204357-17204497)
[»] scaffold0129 (2 HSPs)
scaffold0129 (293-348)||(10487-10542)
scaffold0129 (254-348)||(33521-33615)
[»] chr6 (1 HSPs)
chr6 (253-348)||(29131320-29131415)
[»] chr3 (2 HSPs)
chr3 (293-348)||(5162456-5162511)
chr3 (24-88)||(53691512-53691573)


Alignment Details
Target: chr5 (Bit Score: 877; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 9 - 897
Target Start/End: Original strand, 15807444 - 15808332
Alignment:
Q  9 aggagcacagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaactaattgttttttctttcaag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807444 aggagcacagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaactaattgttttttctttcaag 15807543  T
Q  109 cggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807544 cggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaac 15807643  T
Q  209 tcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807644 tcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatg 15807743  T
Q  309 actctttgaacccaacttcacccaaaattgatatgtgaaattttgatttcttcagtttaatttttgataaatatcaactactactacctatatatttctt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15807744 actctttgaacccaacttcacccaaaattgatatgtgaaattttgatttcttcagtttaatttttgataaacatcaactactactacctatatatttctt 15807843  T
Q  409 cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807844 cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt 15807943  T
Q  509 cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcgtcctgatcaaacctccttaagcatcccaat 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15807944 cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcatcctgatcaaacctccttaagcatcccaat 15808043  T
Q  609 agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808044 agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga 15808143  T
Q  709 ggaacaacctatgaattaggaggaacgacctatacgcactgcaacttgatcttgagtggccatgaagtaagagatatgaaatcagctaatatatgttttt 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808144 ggaacaacctatgaattaggaggaacgacctatacgcactgcaacttgatcttgagtggccatgaagtaagagatatgaaatcagctaatatatgttttt 15808243  T
Q  809 tataatttgtagtcaacagaatcatcaactgatatatttgcatcaatttctttgttacaaaaatgcagatatttttggaagaatttaat 897  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15808244 tataatttgtagtcaacagaatcatcaactgatatatttgcatcaatttctttgttacaaaaatgcagatatttttgtaagaatttaat 15808332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 163 - 348
Target Start/End: Original strand, 41859542 - 41859727
Alignment:
Q  163 accaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaatagga 262  Q
    |||||| ||||| ||||||||||||||||||| |||| ||||||  |||||||||||||| | ||| || ||||| || ||||||| || ||||||||||    
T  41859542 accaaggtcttcaattctctgggtgcttaaattaaacaaaactagttcattatcctttttccggaaaaacatatctcctttcttaccaactccaatagga 41859641  T
Q  263 tgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
     | | ||   | | ||| ||||||||||  ||||||||| ||||||||||||| | |||||||||||| |||| |||||| |||||    
T  41859642 cgcttaacatcggacaacggacctacaacgaagagtttgatccatgactctttaatcccaacttcacctaaaactgatatatgaaa 41859727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 152 - 348
Target Start/End: Original strand, 42629498 - 42629694
Alignment:
Q  152 tcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaa 251  Q
    |||||||| |||||||||||||| ||| | |||||| |||||| ||| |||||||  |  |||||||||||| | ||| ||||||| || || |||| ||    
T  42629498 tcacctttgacaccaagctcttcaattttttgggtgattaaattaaaacaaactagtttgttatccttttttttcaagtatatatcaccatttttaccaa 42629597  T
Q  252 ttccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
     |||||||||||| ||||  |  | ||| ||||| |||||||| |||||| |||||||||| || |  || |||||||||||||||||||| |||||    
T  42629598 ctccaataggatgctcaacacaggtcaacggacccacaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaa 42629694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 152 - 345
Target Start/End: Original strand, 9575310 - 9575503
Alignment:
Q  152 tcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaa 251  Q
    ||||||||||||||||||||| | ||| |||||||| |||||| ||||| | |||| | ||||||||||||||| |||||||| || ||||| |||| ||    
T  9575310 tcacctttaacaccaagctctacaattttctgggtgattaaattaaacctagctaattgattatccttttttctaaagaatatgtcaccctttttaccaa 9575409  T
Q  252 ttccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtg 345  Q
     ||| |||||||| | ||       ||| ||| |||| || |||||||||||||||||||| || |  ||||||| | |||||| |||||||||    
T  9575410 ctcctataggatgcttaacatagaacaacggatctacgatgaagagtttggtccatgactccttcattccaactttatccaaaactgatatgtg 9575503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 349
Target Start/End: Original strand, 42840417 - 42840578
Alignment:
Q  188 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 287  Q
    ||||||||||||||| |||  ||||| || |||||| | |  ||||||| ||||||||| |    |||||| ||||  |||| || ||| || ||||| |    
T  42840417 cttaaatcaaaccaagctagttcattgtctttttttataatcaatatattgcccttcttccctgctccaattggatactcaaggcaaggtaagggaccaa 42840516  T
Q  288 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaat 349  Q
    ||||||||| ||| |||||||| ||||| |  |||| ||||||||||||||| |||||||||    
T  42840517 caataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaat 42840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 1040119 - 1040219
Alignment:
Q  169 ctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttca 268  Q
    |||||| ||||| || |||||||| | |||||||||||| ||||  || |||||||| |||||||||||  |||||||||  | |||||||||||| |||    
T  1040119 ctcttcaattctttgagtgcttaagttaaaccaaactaattcatcgtcgttttttctaaagaatatatcttccttcttaccgactccaataggatgctca 1040218  T
Q  269 a 269  Q
    |    
T  1040219 a 1040219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 42637359 - 42637414
Alignment:
Q  293 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
    ||||||||||||||||| || || | ||| ||||||||||||||||||||||||||    
T  42637359 aagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaa 42637414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 42637224 - 42637330
Alignment:
Q  155 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattc 254  Q
    |||||||||||||  | || |||||| || || ||||||| ||| |||||||  |||| ||| |||||||| ||||||||||| || |||||||  | ||    
T  42637224 cctttaacaccaaattgttggattctttgtgtacttaaattaaagcaaactagttcatcatcgttttttctaaagaatatatcaccattcttactcactc 42637323  T
Q  255 caatagg 261  Q
    |||||||    
T  42637324 caatagg 42637330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 715
Target Start/End: Original strand, 15815386 - 15815451
Alignment:
Q  653 ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa 715  Q
    |||||||| |||||||||| ||||||||    |||||||||||||||||||||||||  ||||||||    
T  15815386 ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa 15815451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 715
Target Start/End: Original strand, 15831701 - 15831766
Alignment:
Q  653 ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa 715  Q
    |||||||| |||||||||| ||||||||    |||||||||||||||||||||||||  ||||||||    
T  15831701 ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa 15831766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 40545178 - 40545121
Alignment:
Q  291 taaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
    |||| |||||| ||||||| || || |  |||||||||||||||||||||||||||||    
T  40545178 taaaaagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaa 40545121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 88 - 345
Target Start/End: Original strand, 3367655 - 3367912
Alignment:
Q  88 ctaattgttttttctttcaagcggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtg 187  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||||| ||||    
T  3367655 ctaattgttttttctttcaagcggcagaaggctttccttataaatcattatccggcaacacaagccacctttaacaccaagctcttcaattctctaggtg 3367754  T
Q  188 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 287  Q
    |||||||  || |||| |  ||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || ||| ||||||||    
T  3367755 cttaaatttaaacaaatttgctcattatctttttttctgaagaatatatcgcccttcttgccaataccaataggatgttcaatgtcacgcataggaccta 3367854  T
Q  288 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtg 345  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  3367855 caataaagagtttggtccatgactctttgaccccaacttcacctaaaattgatatgtg 3367912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 3367529 - 3367598
Alignment:
Q  16 cagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaac 88  Q
    |||||| ||||||||||||||| |||||||||||| ||||   |||||||||||| | ||| |||||||||||    
T  3367529 cagataaccaatatcagtaatgatgtattgccatatcatt---atgctcacaaagtaaaaactaaaataaaac 3367598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 370 - 577
Target Start/End: Original strand, 25287071 - 25287278
Alignment:
Q  370 ttttgataaatatcaactactactacctatatatttcttcagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaa 469  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||    
T  25287071 ttttgataaatatcaactactaccgcctatatatttcttcagtttaattttattacatgactctaatcctattgccttaaacaacaataacacaattcaa 25287170  T
Q  470 tccttcaccaaaaatcaattttcacataaaatccattttcacatgcatcaaccaaccacaacaaatc-taaagttcaaaaaataagacataaaatataac 568  Q
    ||||||| | |||||| ||||||||||||||||||||  ||||| |||||||| |||||||||||||  |||||| |||||| |||||||||| ||||||    
T  25287171 tccttcagcgaaaatcgattttcacataaaatccattaacacatacatcaacc-accacaacaaatcaaaaagttaaaaaaagaagacataaattataac 25287269  T
Q  569 taccttagc 577  Q
    |||||||||    
T  25287270 taccttagc 25287278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 16921183 - 16921102
Alignment:
Q  155 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatat 236  Q
    |||||||||||||||||||| ||  | |||||  | ||||||||||| ||||  |||||||| | |||||||||||||||||    
T  16921183 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatat 16921102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 44937800 - 44937861
Alignment:
Q  287 acaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
    |||| ||||||||| |||||||| ||||| |  || | ||||||||||||||||||||||||    
T  44937800 acaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaa 44937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 88 - 348
Target Start/End: Complemental strand, 45867124 - 45866864
Alignment:
Q  88 ctaattgttttttctttcaagcggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtg 187  Q
    |||||||||  ||||  ||| |||||||||||||||||||||||  |||||| |||||  ||| | ||||||||||||||||||||| ||| |||| |||    
T  45867124 ctaattgttgattctggcaatcggtagaaggctttccttataaactattatctggcaaagtgaataacctttaacaccaagctcttcaattttctgtgtg 45867025  T
Q  188 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 287  Q
    ||||||| |||  ||||||  |||| ||| | |||||| ||||||||||| ||| |||||| ||||| ||||||||| || |  | || ||||| ||| |    
T  45867024 cttaaattaaatgaaactagttcatcatcttcttttctaaagaatatatcacccgtcttaccaattctaataggatggtcgacacaagacaaagaaccca 45866925  T
Q  288 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
    ||||||| |||||| |||||||||| || |  |||| |||||| |||||||||||||||||    
T  45866924 caataaaaagtttgatccatgactccttcactccaatttcacctaaaattgatatgtgaaa 45866864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 42446402 - 42446349
Alignment:
Q  295 gagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
    ||||||||||||||| || ||||   ||| ||||||||||||||||||||||||    
T  42446402 gagtttggtccatgattccttgatagcaagttcacccaaaattgatatgtgaaa 42446349  T

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Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 496 - 631
Target Start/End: Complemental strand, 17204497 - 17204357
Alignment:
Q  496 taaaatccattttcacatgcatcaaccaaccacaacaaatcta-aagttcaaaaaataagacata-aaat-ataactaccttagcgtcctgatcaaa--c 590  Q
    |||||||||||| ||||| |||||||||||||||||||||| | |||||| |||| ||||||||| |||| |||||||||||||| |||||| ||||  |    
T  17204497 taaaatccatttccacatacatcaaccaaccacaacaaatcaacaagttccaaaactaagacatacaaatcataactaccttagcatcctgaccaaactc 17204398  T
Q  591 ctccttaagcatcccaatagaaccaggatcacaagcatcat 631  Q
    || |||||  |||||||||||||||||| ||||| ||||||    
T  17204397 cttcttaaaaatcccaatagaaccaggaccacaaacatcat 17204357  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 10542 - 10487
Alignment:
Q  293 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
    |||||||| ||||| ||||| || |  |||||||||||||||||||||||||||||    
T  10542 aagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaa 10487  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 254 - 348
Target Start/End: Original strand, 33521 - 33615
Alignment:
Q  254 ccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
    ||||||||||| || |||| ||| ||||| || | |||||||||||| ||||| ||||| || |  |||| |||||||||||| || ||||||||    
T  33521 ccaataggatgctcgatgcaaggtaaaggcccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaa 33615  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 29131415 - 29131320
Alignment:
Q  253 tccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
    |||||||||| | |||| ||||| ||| || || ||||| ||||  |||||||| || ||||| |  |||| ||||||||||||||||||||||||    
T  29131415 tccaataggacgctcaacgccagacaatggtccaacaatgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaa 29131320  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 5162511 - 5162456
Alignment:
Q  293 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 348  Q
    ||||||||| ||||||| || || |  |||||||||||||||||||||||||||||    
T  5162511 aagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaa 5162456  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 53691573 - 53691512
Alignment:
Q  24 caatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaac 88  Q
    ||||||||||||||||||||||| ||| || |   |||||||||||| ||||| |||||||||||    
T  53691573 caatatcagtaatggtgtattgcaataccaat---atgctcacaaagtagaaactaaaataaaac 53691512  T

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