View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_10 (Length: 514)
Name: NF3943_high_10
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 489
Target Start/End: Complemental strand, 42536006 - 42535534
Alignment:
| Q |
12 |
agaggagtgaaaaatgtttacttttggagatcaatcgcgtgacccgcgttttaaatatctttcaatgtttcttatatctcaccaaccgagctgtctacac |
111 |
Q |
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| T |
42536006 |
agaggagtgaaaaatgtttatttttggagatcaatcgcgtgacct---ttttaaatatctttcaatgttccttag--ctcaccaaccaagctctctagag |
42535912 |
T |
|
| Q |
112 |
aaaacaattcattaagaatttaaccaagtaattgatattaataagttgttgataaagatgaattgttcgagataacatgaatatgatttttgagttaaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| |||||| ||||||||| |
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| T |
42535911 |
aaaacaattcattaagaatttaaccaagtaattgatattaataagttgttgaaaaagatgaatcgtttaagataacatgaatacgattttcgagttaaat |
42535812 |
T |
|
| Q |
212 |
aattttttgtcaaactttacttacctttcaatcaaattccagattagaatgactattttctctaaaagtcgactcagctagttgcaagtcactgggtttt |
311 |
Q |
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||||||||||||||||| | |||||| ||| ||||| |||| |||| ||| ||| || |||||||||||||||| |||||||||||||||||||||||| |
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| T |
42535811 |
aattttttgtcaaacttgaattacctctcagtcaaactccaaattattatggctacttcctctaaaagtcgactcggctagttgcaagtcactgggtttt |
42535712 |
T |
|
| Q |
312 |
caaattgaccatgtctctgaattggaagccatattgaattcttgctagacacttcttagttcttttataaattatgtagctcactctttagcaaagacga |
411 |
Q |
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| T |
42535711 |
caaatcgaccatgtctctgaattggaagccatattgaattcttgctagacacttcttagttcttttataaattatgtagctcactctttagcaaagacga |
42535612 |
T |
|
| Q |
412 |
taataattattttggcacaactatcttatacttttattgtatttttacaatctctttgtttttatcttcttaacaaat |
489 |
Q |
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| T |
42535611 |
taataattattttggcacaactatctcatacttttattgtatttttacaatctctttgtttttgtcttcttaacaaat |
42535534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 4248062 - 4248134
Alignment:
| Q |
165 |
aaagatgaattgttcgagataacatgaatatgatttttgagttaaataattttttgtcaaactttacttacct |
237 |
Q |
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| T |
4248062 |
aaagatgaattgttcatgaaaaccttaatctgatttttgggtgagataatttttgatcaaactttacttacct |
4248134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 36899412 - 36899452
Alignment:
| Q |
209 |
aataattttttgtcaaactttacttacctttcaatcaaatt |
249 |
Q |
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| T |
36899412 |
aataattatttgtcaaactttacttacatttcaatcaaatt |
36899452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 6100805 - 6100743
Alignment:
| Q |
195 |
tgatttttgagttaaataattttttgtcaaactttacttacctttcaatcaaattccagatta |
257 |
Q |
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|||||||| | |||||||||||||||| | |||||||||||||| ||| |||| |||| |||| |
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| T |
6100805 |
tgatttttaaattaaataattttttgttagactttacttaccttccaaccaaactccaaatta |
6100743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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