View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_13 (Length: 472)
Name: NF3943_high_13
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 27429406 - 27429096
Alignment:
| Q |
15 |
ggtgtctgtattaatgtggtgaggttttcaggttttgttgttttggggtgagtgggaatgtggggtttagtgcaataagcaaaaagttgatggagatagt |
114 |
Q |
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| T |
27429406 |
ggtgtctgtattaatgtggtgaggttttcaggttttgttgttttggggtgagtgggaatgtggggtttagtccaataagcaaaaagttgatggagatagt |
27429307 |
T |
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| Q |
115 |
taatttgtgaatgttgtgagatatatcctatttacagcattcaaaatacaatggccacacactcctgatcctcatgaataatgattacttacctttatat |
214 |
Q |
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| T |
27429306 |
taatttgtgaatgttgtgagatatatcctatttacagcattcaaaatacaatggccacacactcctgatcctcatgaataatgattacttacctttatat |
27429207 |
T |
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| Q |
215 |
ataaagagagaaaataaagcatct--------ctttttgggttgtaaatgtttgaaagtgttatttgagtcgatacattgaaatgaggtatcatcttttc |
306 |
Q |
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| T |
27429206 |
ataaagagagaaaataaagcatctctatttaactttttgggttgtcaatgtttgaaagtgttatttgagtcgatacattgaaatgaggtatcatcttttc |
27429107 |
T |
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| Q |
307 |
agcataaatgt |
317 |
Q |
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| T |
27429106 |
agcataaatgt |
27429096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 471
Target Start/End: Complemental strand, 27428202 - 27428043
Alignment:
| Q |
334 |
tgatacgctgaattttgtataaaaaa-tag--gtgttctataaccagacactagcataatagcat----ct----------tttcaacctcggtttttac |
416 |
Q |
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| T |
27428202 |
tgatactctgaattttttataaaaaaatagttgtgttctataaccagacactagcataatagcattgtgctattgtgtttgtgtcaacctcggattttac |
27428103 |
T |
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| Q |
417 |
tact-----aaaaaatctttagatagttataaaaattagagattttaccatcaaatttgt |
471 |
Q |
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| T |
27428102 |
tactaactaaaaaaatctttagatagttataaaaattagagattttaccatcaaatttgt |
27428043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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