View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_24 (Length: 406)
Name: NF3943_high_24
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 52325322 - 52325044
Alignment:
| Q |
19 |
atttggtgattgtctgtagaaagcagcagtccctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggctttttcttctgcatcacca |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52325322 |
atttggtgattgtctgtagaaagcagcagttcctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggctttttcttctgcatcgcca |
52325223 |
T |
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| Q |
119 |
tatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatt |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52325222 |
tatgttccttcagatttcatatgggcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatt |
52325123 |
T |
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| Q |
219 |
tctcaaagggacctaaaaacacccaaaaataagtgagtacatacatttacacacatgctactaactataattcattgct |
297 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52325122 |
tctcaaagggacctaaaaacacccataaataagtgagtatatacatttacacacatgctactaactataattcattgct |
52325044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 52329752 - 52329515
Alignment:
| Q |
19 |
atttggtgattgtctgtagaaagcagcagtccctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggctttttcttctgcatcacca |
118 |
Q |
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|||||||||||||||| ||||| || ||| ||||||||||||||||||| |||| || |||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
52329752 |
atttggtgattgtctgaagaaaacaccagcccctggtggaaaaaattgaaccttgaaggcttctctaagttcttgaatggctttttcttctgcatcgcca |
52329653 |
T |
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| Q |
119 |
tatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatt |
218 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
52329652 |
tatgttccttcaaatttcatatgggcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacatcgaataaact |
52329553 |
T |
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| Q |
219 |
tctcaaagggacctaaaaacacccaaaaataagtgagt |
256 |
Q |
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||||||||||||||||| ||||||| |||||| ||||| |
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| T |
52329552 |
tctcaaagggacctaaacacacccataaataaatgagt |
52329515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 52332889 - 52332795
Alignment:
| Q |
118 |
atatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaa |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52332889 |
atatgttccttcagatttcatatgggcaatgcaattttctgacacctttctcacatattcactaccgtctagtgttctcacctttgtacttcgaa |
52332795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 397
Target Start/End: Complemental strand, 52324903 - 52324856
Alignment:
| Q |
350 |
atgattaggggcatatgatcattatggagtagtatgttgctacctttg |
397 |
Q |
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| T |
52324903 |
atgattaggggcatatgatcattatggagtagtatgttgctacctttg |
52324856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 52322108 - 52321994
Alignment:
| Q |
119 |
tatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatt |
218 |
Q |
| |
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|||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||| || | ||| | | |||| | |||||| |||| |
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| T |
52322108 |
tatgttccatcagatttcatataagcaatacaattttctgacaccttcctcacatattcacgaccgtccaaagtttttaactttccccctcgaatcaatt |
52322009 |
T |
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| Q |
219 |
tctcaaagggaccta |
233 |
Q |
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||||||||||||||| |
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| T |
52322008 |
tctcaaagggaccta |
52321994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 87 - 261
Target Start/End: Complemental strand, 9179381 - 9179216
Alignment:
| Q |
87 |
attcttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttc |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9179381 |
attcttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgggcaatgcaattttctgatacctttctcacatattcactaccttc |
9179282 |
T |
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| Q |
187 |
tagtgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacacccaaaaataagtgagtacata |
261 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||| || |||| | ||| ||||||||||| |
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| T |
9179281 |
tagtgttc---------tacttcgaataaatttctcaaagagacctaaacactcccatagatacgtgagtacata |
9179216 |
T |
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