View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_25 (Length: 399)
Name: NF3943_high_25
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 5154872 - 5155032
Alignment:
| Q |
6 |
aaacctcacactctagattctagaccaattactgactgatcgtcagggtgtttctaggtgcgccaccacagacggacaatctagttccactccaaatcac |
105 |
Q |
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| T |
5154872 |
aaacctcacactctagattctagaccaattactgactgatcatcagggtgtttctaggtacgccaccccagacggacaatctagttccactccaaatcac |
5154971 |
T |
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| Q |
106 |
aaacttgaatcctcaaatttcacataaagcacatgtttaattgtattttggtttcaggaac |
166 |
Q |
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| T |
5154972 |
aaacttgaatcctcaaatttcacataaagcacatgtttaattgtattttggtttcaggaac |
5155032 |
T |
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Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 265 - 399
Target Start/End: Original strand, 5155129 - 5155263
Alignment:
| Q |
265 |
ccgaatcaggatattgaatagtccggtaacagcgaccacttttagcttcccaaaatcgaatggtgtgatcatagctagcagtggcgagtaacactgatgg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5155129 |
ccgaatcaggatattgaatagtccggtaacagcgaccacttttagcttcccaaaatcgaatggtgtgatcatagctagcagtggcgagtaacactgatgg |
5155228 |
T |
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| Q |
365 |
ttgactcatcctaatccacgaatcttcctcttctt |
399 |
Q |
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| T |
5155229 |
ttgactcatcctaatccacgaatcttcctcttctt |
5155263 |
T |
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