View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_high_4 (Length: 730)

Name: NF3943_high_4
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_high_4
NF3943_high_4
[»] chr7 (20 HSPs)
chr7 (108-395)||(47543398-47543685)
chr7 (108-395)||(4609495-4609769)
chr7 (442-548)||(32786788-32786894)
chr7 (108-263)||(10315043-10315198)
chr7 (479-561)||(28337239-28337322)
chr7 (108-263)||(31030341-31030496)
chr7 (116-234)||(17116404-17116522)
chr7 (500-560)||(27075022-27075082)
chr7 (500-560)||(27203231-27203291)
chr7 (335-395)||(31030210-31030270)
chr7 (442-560)||(25119736-25119855)
chr7 (442-548)||(26081030-26081136)
chr7 (442-548)||(26104817-26104923)
chr7 (328-395)||(10315262-10315329)
chr7 (497-546)||(31054226-31054275)
chr7 (135-232)||(38153904-38154001)
chr7 (435-507)||(37394347-37394419)
chr7 (444-495)||(4132533-4132584)
chr7 (527-557)||(24609186-24609216)
chr7 (484-561)||(39837444-39837522)
[»] chr6 (17 HSPs)
chr6 (108-395)||(32196657-32196944)
chr6 (108-267)||(7824105-7824264)
chr6 (111-233)||(11324442-11324564)
chr6 (442-560)||(30249142-30249261)
chr6 (471-552)||(29285996-29286077)
chr6 (442-536)||(3787426-3787520)
chr6 (105-238)||(17292763-17292896)
chr6 (135-254)||(18673363-18673482)
chr6 (150-208)||(9200938-9200996)
chr6 (441-561)||(6469593-6469714)
chr6 (135-254)||(5667346-5667465)
chr6 (116-234)||(34714895-34715013)
chr6 (335-388)||(16853202-16853255)
chr6 (327-395)||(9200764-9200832)
chr6 (473-540)||(2614366-2614433)
chr6 (135-228)||(2682761-2682854)
chr6 (139-212)||(7155422-7155495)
[»] chr1 (32 HSPs)
chr1 (111-395)||(32160044-32160327)
chr1 (106-395)||(15259370-15259659)
chr1 (287-395)||(1951845-1951953)
chr1 (153-254)||(26260768-26260869)
chr1 (135-239)||(27568382-27568486)
chr1 (135-265)||(27363725-27363855)
chr1 (442-561)||(11017985-11018105)
chr1 (442-548)||(31635439-31635545)
chr1 (138-247)||(44675097-44675206)
chr1 (442-561)||(1035566-1035686)
chr1 (448-548)||(15281371-15281471)
chr1 (442-549)||(28490555-28490661)
chr1 (111-205)||(38133069-38133163)
chr1 (471-536)||(37316643-37316708)
chr1 (448-543)||(25366739-25366834)
chr1 (170-212)||(9484879-9484921)
chr1 (329-395)||(27264772-27264838)
chr1 (329-395)||(27363599-27363665)
chr1 (442-536)||(36012485-36012579)
chr1 (479-536)||(4084733-4084790)
chr1 (471-548)||(11420840-11420917)
chr1 (130-234)||(12688172-12688276)
chr1 (442-561)||(16394823-16394943)
chr1 (452-536)||(16583163-16583247)
chr1 (144-212)||(25392345-25392413)
chr1 (509-548)||(14758774-14758813)
chr1 (138-228)||(4889452-4889542)
chr1 (512-549)||(3895975-3896012)
chr1 (135-228)||(6723718-6723811)
chr1 (135-188)||(10686232-10686285)
chr1 (361-394)||(41429795-41429828)
chr1 (129-234)||(48973644-48973749)
[»] chr3 (22 HSPs)
chr3 (108-395)||(4740971-4741255)
chr3 (108-395)||(13043321-13043608)
chr3 (108-395)||(13051398-13051685)
chr3 (136-233)||(14788867-14788964)
chr3 (448-557)||(4539860-4539970)
chr3 (440-560)||(25134130-25134252)
chr3 (135-247)||(20017410-20017522)
chr3 (442-561)||(39430258-39430378)
chr3 (138-254)||(47160990-47161106)
chr3 (442-561)||(47849967-47850087)
chr3 (442-560)||(18029986-18030105)
chr3 (484-549)||(25102037-25102102)
chr3 (440-549)||(54787855-54787964)
chr3 (135-247)||(6894192-6894304)
chr3 (442-561)||(47006594-47006714)
chr3 (460-548)||(48192624-48192712)
chr3 (519-561)||(44418527-44418570)
chr3 (451-560)||(25096289-25096398)
chr3 (442-548)||(47499429-47499535)
chr3 (135-228)||(25845647-25845740)
chr3 (174-207)||(33388601-33388634)
chr3 (479-548)||(37919193-37919262)
[»] chr2 (29 HSPs)
chr2 (439-713)||(43451711-43451988)
chr2 (174-366)||(8090506-8090698)
chr2 (108-272)||(40638766-40638930)
chr2 (108-395)||(20948080-20948363)
chr2 (442-561)||(44068825-44068945)
chr2 (138-253)||(31640241-31640356)
chr2 (448-557)||(29877062-29877172)
chr2 (442-536)||(25626471-25626565)
chr2 (135-232)||(27708189-27708286)
chr2 (17-66)||(43451281-43451330)
chr2 (135-233)||(44735977-44736075)
chr2 (471-540)||(7061551-7061620)
chr2 (442-535)||(25626319-25626412)
chr2 (138-234)||(27009200-27009296)
chr2 (448-548)||(32294567-32294667)
chr2 (442-561)||(39420236-39420356)
chr2 (442-549)||(2889104-2889211)
chr2 (442-561)||(20061098-20061218)
chr2 (192-395)||(9420594-9420795)
chr2 (440-561)||(39364418-39364540)
chr2 (141-254)||(45131107-45131220)
chr2 (499-561)||(4828883-4828946)
chr2 (138-225)||(9840768-9840855)
chr2 (442-533)||(37230559-37230650)
chr2 (442-548)||(14275754-14275859)
chr2 (139-241)||(33645830-33645932)
chr2 (472-557)||(36284993-36285079)
chr2 (147-212)||(21563423-21563488)
chr2 (138-259)||(30505717-30505838)
[»] chr5 (19 HSPs)
chr5 (170-395)||(16610602-16610827)
chr5 (108-395)||(31706269-31706552)
chr5 (140-395)||(29651644-29651894)
chr5 (328-395)||(30722365-30722432)
chr5 (108-260)||(704490-704642)
chr5 (108-208)||(30722538-30722638)
chr5 (108-260)||(27482646-27482798)
chr5 (442-548)||(26105007-26105113)
chr5 (442-561)||(24519443-24519564)
chr5 (440-531)||(8222097-8222188)
chr5 (484-557)||(16627306-16627380)
chr5 (163-253)||(29994645-29994735)
chr5 (471-548)||(554345-554422)
chr5 (135-179)||(22922506-22922550)
chr5 (459-561)||(43340294-43340397)
chr5 (441-543)||(10523652-10523754)
chr5 (147-253)||(18967864-18967970)
chr5 (135-184)||(22924159-22924208)
chr5 (471-536)||(29557499-29557564)
[»] scaffold0236 (1 HSPs)
scaffold0236 (251-395)||(19869-20009)
[»] chr4 (21 HSPs)
chr4 (117-253)||(52577965-52578101)
chr4 (442-557)||(27918383-27918499)
chr4 (442-548)||(42051169-42051275)
chr4 (129-228)||(9831377-9831476)
chr4 (467-557)||(38705768-38705859)
chr4 (442-548)||(22019387-22019493)
chr4 (440-548)||(14138971-14139079)
chr4 (328-395)||(1002923-1002990)
chr4 (442-536)||(29818525-29818621)
chr4 (108-228)||(30972395-30972515)
chr4 (135-234)||(22653286-22653385)
chr4 (471-557)||(54719669-54719756)
chr4 (443-536)||(36937484-36937578)
chr4 (135-228)||(11131194-11131287)
chr4 (182-254)||(19846574-19846646)
chr4 (144-228)||(43001717-43001801)
chr4 (442-537)||(1961608-1961703)
chr4 (479-534)||(41459958-41460013)
chr4 (135-225)||(8830949-8831039)
chr4 (138-235)||(25130441-25130538)
chr4 (442-561)||(36989831-36989952)
[»] chr8 (17 HSPs)
chr8 (314-395)||(30773070-30773151)
chr8 (328-395)||(5752172-5752239)
chr8 (135-234)||(8462514-8462613)
chr8 (442-560)||(40505298-40505417)
chr8 (440-561)||(41602401-41602523)
chr8 (442-561)||(6530304-6530424)
chr8 (471-548)||(35865159-35865236)
chr8 (482-557)||(42685747-42685823)
chr8 (147-212)||(5751992-5752057)
chr8 (442-561)||(31313305-31313425)
chr8 (467-549)||(12703477-12703559)
chr8 (144-234)||(33282823-33282913)
chr8 (106-204)||(39435484-39435582)
chr8 (442-548)||(39699623-39699729)
chr8 (437-561)||(8769041-8769166)
chr8 (471-536)||(21372470-21372535)
chr8 (135-228)||(37929106-37929199)
[»] scaffold0116 (1 HSPs)
scaffold0116 (465-548)||(3019-3102)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 108 - 395
Target Start/End: Original strand, 47543398 - 47543685
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  47543398 tttaatgtcaaagattgttcggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaatt 47543497  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 307  Q
    |||||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  47543498 atcatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 47543597  T
Q  308 tgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  47543598 tgttcttgactctgatgtcctttcctgagtacgtcttgtgctcggaaagactcttttgaggtggtattataattcattttagcttctt 47543685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 108 - 395
Target Start/End: Complemental strand, 4609769 - 4609495
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||| ||||||| ||| | ||||  |||||||||||||||||||| | |||||||| ||||||||||||| |||||| | ||||||||||| ||||||    
T  4609769 tttaatatcaaagaatgctctgttaatcaggtggtcgataagattaaattgcttgcttatacgtggttgaaggcgaagtatatttctcttcccctcaatt 4609670  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttt-tttgtttatgatcagttaggcaacttttgtatata 306  Q
    | |||  ||||||||         ||| ||| || ||||| ||||||||||| |||||| |||| |||| ||   |     ||||| ||| ||||| |||    
T  4609669 accatgggtggtggc---------ttaccatattgggcataggctaagagttacttttccgtttatttgctttgta-----taggcgactgttgtaaata 4609584  T
Q  307 ttgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    | ||| |||||||| | |||||||||| ||||||||||||||| | || |||| ||||||||||||| |||||||||||||| ||||||    
T  4609583 tcgttgttgactctaaagtcctttccttagtacgtcttgtgctagaaagaacttttttgaggtggtaatataattcattttaacttctt 4609495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 442 - 548
Target Start/End: Original strand, 32786788 - 32786894
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||| ||||| | ||| |||||| ||||| |||||||||||| | |||| |||| ||||| | |||||||||||||||||||||||||    
T  32786788 aaatgctaacttgtgccctcaagggcacatgttaaggaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaatatt 32786887  T
Q  542 atatttt 548  Q
    || ||||    
T  32786888 atgtttt 32786894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 263
Target Start/End: Original strand, 10315043 - 10315198
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| ||||| |||||||||  ||||| |   ||||||||| ||||||    
T  10315043 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacatggttgaaggtgaagtattcctctcttcccctcaatt 10315142  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 263  Q
    | ||   |||||||||||| | |||||  ||||| ||||| ||||||| |||||||    
T  10315143 accacgggtggtggcttagcccgtttactattttgggcataggctaagtgtttctt 10315198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 479 - 561
Target Start/End: Original strand, 28337239 - 28337322
Alignment:
Q  479 aacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattttt-aatgcaaagttg 561  Q
    |||| |||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  28337239 aactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaaatactatatttttcaatgcaaagttg 28337322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 263
Target Start/End: Complemental strand, 31030496 - 31030341
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| |||||||||||||||  ||||| |   ||||||||| ||||||    
T  31030496 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacgtggttgaaggtgaagtattcctctcttcccctcaatt 31030397  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 263  Q
    | ||   |||||||||||  | |||||  ||||| ||||| ||||||| |||||||    
T  31030396 accacgggtggtggcttaacccgtttactattttgggcataggctaagtgtttctt 31030341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 17116522 - 17116404
Alignment:
Q  116 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 215  Q
    |||||||||| |||| || || ||||| |||||||||||||| || || |||| |||||||||| |||| | || |||||||||||||| |||||||       
T  17116522 caaagattgctcggtaatacaagtggttgataagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggt 17116423  T
Q  216 tggtggcttagtctgttta 234  Q
    |||||||||||||||||||    
T  17116422 tggtggcttagtctgttta 17116404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 500 - 560
Target Start/End: Complemental strand, 27075082 - 27075022
Alignment:
Q  500 tattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttttaatgcaaagtt 560  Q
    |||||||||| || || ||||||| ||||||||||||||||||||||||||||||| ||||    
T  27075082 tattaaaaattgtatattcaactttttaaaagttaaaatattatatttttaatgcatagtt 27075022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 500 - 560
Target Start/End: Original strand, 27203231 - 27203291
Alignment:
Q  500 tattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttttaatgcaaagtt 560  Q
    |||||||||| || || ||||||| ||||||||||||||||||||||||||||||| ||||    
T  27203231 tattaaaaattgtatattcaactttttaaaagttaaaatattatatttttaatgcatagtt 27203291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 31030270 - 31030210
Alignment:
Q  335 agtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    ||||||||||||| | | ||| ||||||||||||||||| |||||||||||||||||||||    
T  31030270 agtacgtcttgtgttaggaaagactcttttgaggtggtaatataattcattttagcttctt 31030210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 442 - 560
Target Start/End: Original strand, 25119736 - 25119855
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| |||||||||| |||||| | |  ||||||  |||||||| || ||||||| ||| ||||| ||||| | |  ||||||||||||||||||||||    
T  25119736 aaatgttaacttgtgccctcaaaaatatatgttaagaaacttattgtagaaatacacgtactaaaagtcgtgcatttgacttcttaaaagttaaaatatt 25119835  T
Q  542 at-atttttaatgcaaagtt 560  Q
    || ||||| |||||||||||    
T  25119836 atgattttcaatgcaaagtt 25119855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 442 - 548
Target Start/End: Complemental strand, 26081136 - 26081030
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||  ||||| | ||| | |||| ||||| |||||| ||||| |  |||||||||| |||   |||||||||||||||||||||||||    
T  26081136 aaatgctaacttgtgtcctcaatggcacatattaaggaactcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaaatatt 26081037  T
Q  542 atatttt 548  Q
    || ||||    
T  26081036 atgtttt 26081030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 442 - 548
Target Start/End: Complemental strand, 26104923 - 26104817
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||  ||||| | ||| | |||| ||||| |||||| ||||| |  |||||||||| |||   |||||||||||||||||||||||||    
T  26104923 aaatgctaacttgtgtcctcaatggcacatattaaggaactcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaaatatt 26104824  T
Q  542 atatttt 548  Q
    || ||||    
T  26104823 atgtttt 26104817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 328 - 395
Target Start/End: Original strand, 10315262 - 10315329
Alignment:
Q  328 tttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||| ||||||||||||||| | ||| |||||||| | |||||| |||||||||||||| ||||||    
T  10315262 tttccttagtacgtcttgtgctaggaaagactcttttaaagtggtaatataattcattttaacttctt 10315329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 31054226 - 31054275
Alignment:
Q  497 atgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatt 546  Q
    ||||||||||| ||||  | ||||||||||||||||||||||||||||||    
T  31054226 atgtattaaaagtcgtacattcaacttcttaaaagttaaaatattatatt 31054275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 38153904 - 38154001
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 232  Q
    ||||||||||||| ||||||||| || ||||||| ||||||||||  ||| |||  | |||||||||| || || |||   |||||||||||||||||    
T  38153904 caggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtctgtt 38154001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 507
Target Start/End: Complemental strand, 37394419 - 37394347
Alignment:
Q  435 aaattgtaaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaa 507  Q
    |||||||||||| ||||||||||| |||||||||| | ||||| || ||||| || ||||| |||||| ||||    
T  37394419 aaattgtaaatgttaacttgtgctatcaaagacacatattaaaaaatttattttaaaaatatatgtatcaaaa 37394347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 4132584 - 4132533
Alignment:
Q  444 atgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaata 495  Q
    |||||||||||||| |||| ||| || ||||||||||||||||||| |||||    
T  4132584 atgctaacttgtgccctcatagatacatgttaaagaacttattatagaaata 4132533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 527 - 557
Target Start/End: Complemental strand, 24609216 - 24609186
Alignment:
Q  527 aaaagttaaaatattatatttttaatgcaaa 557  Q
    |||||||||||||||||||||||||||||||    
T  24609216 aaaagttaaaatattatatttttaatgcaaa 24609186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 484 - 561
Target Start/End: Complemental strand, 39837522 - 39837444
Alignment:
Q  484 attatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattttt-aatgcaaagttg 561  Q
    |||||| ||||||| |||| |||| ||||| | ||||||||||||||||| |  |||||||||||| | ||||||||||    
T  39837522 attatagaaatacacgtatcaaaagtcgtgcattcaacttcttaaaagttgacctattatatttttcagtgcaaagttg 39837444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 108 - 395
Target Start/End: Complemental strand, 32196944 - 32196657
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||||||  |||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||||    
T  32196944 tttaatgtcaaagattgttcggttatccaggtggtcgaccagattaagtcgcttacttttacatggttgaagacgaagtttagttctcttcccttcaatt 32196845  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 307  Q
    | |||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  32196844 aacatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 32196745  T
Q  308 tgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||    
T  32196744 tgttcttgactctgatgtcctttcctaagtacgtcttgtgcttggaaagactcttttgaggtggtattataattcattttagcttctt 32196657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 108 - 267
Target Start/End: Complemental strand, 7824264 - 7824105
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||| ||| ||||||  ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  7824264 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaagattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 7824165  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttct 267  Q
    | |||  |||||||||||| | ||| | |||||| ||||| ||||||| |||||||||||    
T  7824164 accatgggtggtggcttagcccgttcaccattttgggcataggctaagtgtttcttttct 7824105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 11324442 - 11324564
Alignment:
Q  111 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 210  Q
    |||| ||||| |||| ||||| | ||| |||| || |||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  11324442 aatgacaaagtttgctcggttcttcagatggtagacaagattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatc 11324541  T
Q  211 atcagtggtggcttagtctgttt 233  Q
    ||  |||||||||||||| ||||    
T  11324542 atgggtggtggcttagtccgttt 11324564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 442 - 560
Target Start/End: Original strand, 30249142 - 30249261
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||| || || ||||| |||||| ||||| |||||| ||||| | |||| |||| ||||| | |||||||||||||||||||||||||    
T  30249142 aaatgctaacttgtgcccttaatgacacatgttaaggaactcattatagaaatataggtatcaaaattcgtgcagtcaacttcttaaaagttaaaatatt 30249241  T
Q  542 atattttt-aatgcaaagtt 560  Q
    || ||||| |||||||||||    
T  30249242 atgtttttcaatgcaaagtt 30249261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 29285996 - 29286077
Alignment:
Q  471 tgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttttaat 552  Q
    |||||| ||||| |||||| ||||| | |||| |||||||||| | |||||||||||||| |||||||||||||||||||||    
T  29285996 tgttaatgaactcattatagaaatatacgtataaaaaatcgtgcattcaacttcttaaaatttaaaatattatatttttaat 29286077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 442 - 536
Target Start/End: Original strand, 3787426 - 3787520
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    ||||||||| |||||| ||||| ||||| ||||||||||||||||||| ||||| | ||||||||| || |  | |||| |||||||||||||||    
T  3787426 aaatgctaatttgtgccctcaaggacacatgttaaagaacttattataaaaatatacgtattaaaagtcatacattcaatttcttaaaagttaaa 3787520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 17292896 - 17292763
Alignment:
Q  105 gtatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 204  Q
    |||||||||| |||||| ||  || |||| |||||||||  |||||||||||| || || || | |||||||||  | || |||| ||||||||||||||    
T  17292896 gtatttaatggcaaagaatgatcgattatgcaggtggtcattaagattaagtctctagcattcatgtggttgaacgccaaatttgcttctcttcccttca 17292797  T
Q  205 attatcatcagtggtggcttagtctgtttatcat 238  Q
    ||||||||   || |||||||||| |||||||||    
T  17292796 attatcatggttgatggcttagtccgtttatcat 17292763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 18673363 - 18673482
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    |||||||| ||||| |||||||| ||| |||||| ||||||||||  ||| | |||   ||||||| |||||||||||   ||||||||||| | |||||    
T  18673363 caggtggtggataaaattaagtctcttacttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgttta 18673462  T
Q  235 tcattttaggcattggctaa 254  Q
      ||||||||||||||||||    
T  18673463 ctattttaggcattggctaa 18673482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 9200996 - 9200938
Alignment:
Q  150 attaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatta 208  Q
    ||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||    
T  9200996 attaagtcgcttgcttttacgtggtagaaggcgaagtatatttctcttcccctcaatta 9200938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 561
Target Start/End: Complemental strand, 6469714 - 6469593
Alignment:
Q  441 taaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatat 540  Q
    ||||||||||||||| | ||||| | ||  |||||| ||| | |||||| ||||| || |||||||| ||||| | |||||||||||||| ||||| |||    
T  6469714 taaatgctaacttgtaccctcaatggcatatgttaaggaattcattatagaaatatatttattaaaagtcgtgcagtcaacttcttaaaaattaaattat 6469615  T
Q  541 tatattttt-aatgcaaagttg 561  Q
     || ||||| ||||||||||||    
T  6469614 catgtttttcaatgcaaagttg 6469593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 5667465 - 5667346
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||||||| |||| |  ||||| ||||||||||||||   |||||| |||||| |||||    
T  5667465 caggtggtcgataggattaagttactgactttcaaatggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgttta 5667366  T
Q  235 tcattttaggcattggctaa 254  Q
      ||||||||||| ||||||    
T  5667365 ctattttaggcataggctaa 5667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 34714895 - 34715013
Alignment:
Q  116 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 215  Q
    |||||| ||| |||| || || ||||| |||||||||||||| ||  |||||| |||||||||  | || |||  |||||||||| ||||||| |||       
T  34714895 caaagaatgctcggtaatacacgtggttgataagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggt 34714994  T
Q  216 tggtggcttagtctgttta 234  Q
    |||||||||||||||||||    
T  34714995 tggtggcttagtctgttta 34715013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 16853202 - 16853255
Alignment:
Q  335 agtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcatttta 388  Q
    ||||||||||||||| | ||  ||||||||||||||||| ||||||||||||||    
T  16853202 agtacgtcttgtgctaggaaggactcttttgaggtggtaatataattcatttta 16853255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 9200832 - 9200764
Alignment:
Q  327 ctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    ||||||| ||||||||||||||| | ||| | ||||||||| ||||| ||| ||||||||||| |||||    
T  9200832 ctttccttagtacgtcttgtgctaggaaagattcttttgagatggtaatattattcattttagtttctt 9200764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 540
Target Start/End: Complemental strand, 2614433 - 2614366
Alignment:
Q  473 ttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatat 540  Q
    ||||| ||||||||||| ||||| | |||| |||| ||||| | ||||||||| ||||||||||||||    
T  2614433 ttaaaaaacttattataaaaatatacgtatcaaaagtcgtgcattcaacttctaaaaagttaaaatat 2614366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 2682761 - 2682854
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 228  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||||||  ||| |||  | || ||| |||||||| ||||   |||||||||||||    
T  2682761 caggttgtcgacaagattaagtcccttgcttttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtc 2682854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 7155422 - 7155495
Alignment:
Q  139 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 212  Q
    |||| |||||||||||||  ||| |||||||||||||||||   || |||  |||||| |||||||||||||||    
T  7155422 tggttgataagattaagtttcttacttttacgtggttgaaggaaaaattttcttctctacccttcaattatcat 7155495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 111 - 395
Target Start/End: Original strand, 32160044 - 32160327
Alignment:
Q  111 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 210  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |    
T  32160044 aatgtcaaagattgctcggttatccaggtgatcgataagattaagtcgcttgcttttacgtggttgaggacgaagtttatttctctttccttcaattacc 32160143  T
Q  211 atcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatattgt 310  Q
    ||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||    
T  32160144 attggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctg-tttttgtttatgatctcttaggtaacttttgtatatattgt 32160242  T
Q  311 tcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||| || |||||||||||||||||||||||||    
T  32160243 tcttgactctgatgtcctttcctgagtatgtcttgtgctcggaaagacttttttgaagtagtattataattcattttagcttctt 32160327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 106 - 395
Target Start/End: Original strand, 15259370 - 15259659
Alignment:
Q  106 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 205  Q
    |||||||||||||| | ||  ||||||  ||||||||||| |||||||| |||||||||||||||||||||||| |||||| | ||||||||||| ||||    
T  15259370 tatttaatgtcaaataatgttcggttaatcaggtggtcgacaagattaaatcgcttgcttttacgtggttgaaggcgaagtatatttctcttcccctcaa 15259469  T
Q  206 ttatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagt-taggcaacttttgtata 304  Q
    ||| |||  ||||| |||||||| ||||| |||  | ||||| |||||||||||||||||||||||| | ||| || || ||  |||  ||| ||||| |    
T  15259470 ttaccatgggtggtagcttagtccgtttaccatactgggcataggctaagagtttcttttctgttttatcttt-tgctctgtacaggagactgttgtaaa 15259568  T
Q  305 tattgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    ||||||| | ||| ||  ||| |||| |  ||||||||||||||| | ||  ||||||||||||||||| |||||||||||||| ||||||    
T  15259569 tattgttttggacactcttgttcttttcatagtacgtcttgtgctaggaatgactcttttgaggtggtaatataattcattttaacttctt 15259659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 287 - 395
Target Start/End: Complemental strand, 1951953 - 1951845
Alignment:
Q  287 ttaggcaacttttgtatatattgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||  ||| ||||||||||||||||||||||||||||||    
T  1951953 ttaggcaacttttgtatatattgttcttgactctgatgtcctttcatgagtacgtcttgtactcagaaagactcttttgaggtggtattataattcattt 1951854  T
Q  387 tagcttctt 395  Q
    |||||||||    
T  1951853 tagcttctt 1951845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 26260768 - 26260869
Alignment:
Q  153 aagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggct 252  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||  |||| ||| || ||||||||||    
T  26260768 aagtctcttgcttttacgtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttgggcattggct 26260867  T
Q  253 aa 254  Q
    ||    
T  26260868 aa 26260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 27568382 - 27568486
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    |||||||| || | ||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||| |||  |||||||||||||||||||     
T  27568382 caggtggtagaaacgattaagtctcttgcttttacgtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagtctgtttg 27568481  T
Q  235 tcatt 239  Q
    |||||    
T  27568482 tcatt 27568486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 135 - 265
Target Start/End: Complemental strand, 27363855 - 27363725
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||    ||||||| || ||||||| |||  || ||||||||||| |||||    
T  27363855 caggtggtcgataagattaagtcgcttgccttttcgtggttgaaggcgaagtactcttctctttccctcaattaccatgggttgtggcttagtccgttta 27363756  T
Q  235 tcattttaggcattggctaagagtttctttt 265  Q
     |||||| ||||| |||||||  ||||||||    
T  27363755 ccattttgggcataggctaaggttttctttt 27363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 442 - 561
Target Start/End: Complemental strand, 11018105 - 11017985
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| |||||||||||||||| | ||| |||||| |||||||||||| ||||| | ||||||||| ||||| | |||||||||||||||||||| |||     
T  11018105 aaatgttaacttgtgctctcaagggcacatgttaaggaacttattatagaaatatacgtattaaaagtcgtgcagtcaacttcttaaaagttaaattatc 11018006  T
Q  542 atatttt-taatgcaaagttg 561  Q
    || ||||  ||||||||||||    
T  11018005 atgttttccaatgcaaagttg 11017985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 548
Target Start/End: Original strand, 31635439 - 31635545
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||||||| ||||||||||||||| || |||||| ||| | |||||  ||||| |  |||||||| ||||| | |||||||||||||||||||||||||    
T  31635439 aaatgctaatttgtgctctcaaagatacatgttaaggaattcattatggaaatatacatattaaaagtcgtgcattcaacttcttaaaagttaaaatatt 31635538  T
Q  542 atatttt 548  Q
    || ||||    
T  31635539 atgtttt 31635545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 44675097 - 44675206
Alignment:
Q  138 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 237  Q
    ||||| |||||||||||| | ||||| || | |||||||||| |||| |||| ||| ||||||||||||||||||   ||||||||||||| ||||||||    
T  44675097 gtggttgataagattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatca 44675196  T
Q  238 ttttaggcat 247  Q
    | || |||||    
T  44675197 tgttgggcat 44675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 442 - 561
Target Start/End: Original strand, 1035566 - 1035686
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| |||||||||| ||||| | ||| |||||| ||||| |||||| ||||| |  ||| |||| || || | ||||||| |||||||||||||||||    
T  1035566 aaatgttaacttgtgccctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcttgcattcaacttattaaaagttaaaatatt 1035665  T
Q  542 atattttt-aatgcaaagttg 561  Q
    ||||||||  |||||||||||    
T  1035666 atatttttcgatgcaaagttg 1035686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 448 - 548
Target Start/End: Complemental strand, 15281471 - 15281371
Alignment:
Q  448 taacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattt 547  Q
    ||||||||||  |||| || || ||||||| || |||||||| ||||| ||| ||||||||||||| | | ||||| |||||| ||||||||||||||||    
T  15281471 taacttgtgccatcaaggatacatgttaaaaaatttattatagaaatatatgcattaaaaatcgtgcatttaactttttaaaaattaaaatattatattt 15281372  T
Q  548 t 548  Q
    |    
T  15281371 t 15281371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 442 - 549
Target Start/End: Complemental strand, 28490661 - 28490555
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||||||| ||||||||| || ||||| |||||| ||| | |||||| ||||| |  ||| |||| ||||| ||||||||||| |||||||||||||||    
T  28490661 aaatgctaatttgtgctcttaatgacacatgttaaggaattcattatagaaatatacatatcaaaa-tcgtgcaatcaacttctaaaaagttaaaatatt 28490563  T
Q  542 atattttt 549  Q
    || |||||    
T  28490562 atgttttt 28490555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 38133163 - 38133069
Alignment:
Q  111 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 205  Q
    |||| ||||| |||| ||||||| |||||| | ||||| ||||||||  |||||| ||||||||||||| |||  ||||||| ||||||||||||    
T  38133163 aatgacaaagtttgctcggttattcaggtgatagataacattaagtcttttgcttatacgtggttgaaggcgagatttgtttttcttcccttcaa 38133069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 536
Target Start/End: Complemental strand, 37316708 - 37316643
Alignment:
Q  471 tgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    |||||| ||||| |||||| ||||| |||||| |||||||||||| | ||||||||||||||||||    
T  37316708 tgttaaggaactcattataaaaatatatgtatcaaaaatcgtgtatttaacttcttaaaagttaaa 37316643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 543
Target Start/End: Original strand, 25366739 - 25366834
Alignment:
Q  448 taacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattat 543  Q
    |||||||||||||||| ||||| |||||| ||||| | |||| || ||   |||| |||| ||||||||| ||||| |||||||||||| ||||||    
T  25366739 taacttgtgctctcaaggacacatgttaaggaactcaatatagaattatccgtatcaaaagtcgtgtaataaactttttaaaagttaaactattat 25366834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 9484879 - 9484921
Alignment:
Q  170 gtggttgaagacgaagtttgtttctcttcccttcaattatcat 212  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcat 9484921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 329 - 395
Target Start/End: Original strand, 27264772 - 27264838
Alignment:
Q  329 ttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    ||||| ||||||||||||| | | ||  ||||||||||||||||| |||||||||||||| ||||||    
T  27264772 ttccttagtacgtcttgtgttaggaaggactcttttgaggtggtaatataattcattttaacttctt 27264838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 27363665 - 27363599
Alignment:
Q  329 ttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    ||||| ||||| ||||||||| | ||  ||||||||||||||||| |||||||||||||| ||||||    
T  27363665 ttccttagtacatcttgtgctaggaatgactcttttgaggtggtaatataattcattttaacttctt 27363599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 442 - 536
Target Start/End: Complemental strand, 36012579 - 36012485
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    ||||| ||||||||||| | |  | ||| ||||||||||||||||||| ||||| | ||||| ||| ||||  |||||||||||||||| |||||    
T  36012579 aaatgttaacttgtgcttttacgggcacatgttaaagaacttattatagaaatataagtattgaaagtcgtacaatcaacttcttaaaaattaaa 36012485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 536
Target Start/End: Original strand, 4084733 - 4084790
Alignment:
Q  479 aacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    ||||||||||| ||||| | ||||||||| ||||||| ||||||| ||||||||||||    
T  4084733 aacttattatagaaatatacgtattaaaagtcgtgtagtcaactttttaaaagttaaa 4084790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 548
Target Start/End: Original strand, 11420840 - 11420917
Alignment:
Q  471 tgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt 548  Q
    |||||||||||| |||||| ||||| || |||||||| | ||||| |||||||||||| ||| ||||| |||| ||||    
T  11420840 tgttaaagaactcattataaaaatatatatattaaaagttgtgtattcaacttcttaatagtaaaaatgttatgtttt 11420917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 12688172 - 12688276
Alignment:
Q  130 ttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtct 229  Q
    |||| |||||||| ||||||||||||| |||  |||||| ||||||||||  |||||||    |||||||||| || ||||||   |||||||||||||     
T  12688172 ttatgcaggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtcc 12688271  T
Q  230 gttta 234  Q
    |||||    
T  12688272 gttta 12688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 561
Target Start/End: Original strand, 16394823 - 16394943
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||   |||| || || |||||| ||||| |||||| ||||| | ||||||||| |||   | || ||||||||||||||||| |||     
T  16394823 aaatgctaacttgtgtcttcaaggatacatgttaaggaactcattataaaaatatacgtattaaaagtcgaacagtctacttcttaaaagttaaattatc 16394922  T
Q  542 atattttt-aatgcaaagttg 561  Q
    || ||||| ||||||||||||    
T  16394923 atgtttttcaatgcaaagttg 16394943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 536
Target Start/End: Original strand, 16583163 - 16583247
Alignment:
Q  452 ttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    ||||| |||||||  ||| |||||| |||||||||||| ||| | | |||| |||| ||||||| |||||||||||| |||||||    
T  16583163 ttgtgttctcaaaagcacatgttaaggaacttattataaaaacatacgtatcaaaagtcgtgtagtcaacttcttaatagttaaa 16583247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 25392413 - 25392345
Alignment:
Q  144 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 212  Q
    ||||||||||||||||| || | || |||||||||| ||||||||  || | |||||||||||||||||    
T  25392413 gataagattaagtcgctcgcatgtatgtggttgaaggcgaagttttcttattttcccttcaattatcat 25392345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 548
Target Start/End: Original strand, 14758774 - 14758813
Alignment:
Q  509 tcgtgtaatcaacttcttaaaagttaaaatattatatttt 548  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  14758774 tcgtataatcaacttcttaaaagttaaaatattatgtttt 14758813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 4889452 - 4889542
Alignment:
Q  138 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 228  Q
    ||||| ||||| |||||||||||||| || | |||||| ||| |||||||   |||||||||||| || ||||||  |||||| |||||||    
T  4889452 gtggttgataaaattaagtcgcttgcattcatgtggttcaaggcgaagttcccttctcttccctttaactatcatgggtggtgacttagtc 4889542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 549
Target Start/End: Original strand, 3895975 - 3896012
Alignment:
Q  512 tgtaatcaacttcttaaaagttaaaatattatattttt 549  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  3895975 tgtaatcaacttctaaaaacttaaaatattatattttt 3896012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 6723811 - 6723718
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 228  Q
    ||||||||||| ||||||||||| ||  |||||| ||||||||||  |||||||  | ||| ||| ||||||| ||||   |||||||||||||    
T  6723811 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtc 6723718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 10686285 - 10686232
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagttt 188  Q
    |||||||| |||||||||||||| ||| | ||| ||||||||||| ||||||||    
T  10686285 caggtggtggataagattaagtcccttacatttgcgtggttgaaggcgaagttt 10686232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 394
Target Start/End: Original strand, 41429795 - 41429828
Alignment:
Q  361 ttttgaggtggtattataattcattttagcttct 394  Q
    ||||||||||||| ||||||||||||||||||||    
T  41429795 ttttgaggtggtaatataattcattttagcttct 41429828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 48973644 - 48973749
Alignment:
Q  129 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 228  Q
    ||||| |||||||| || || ||||||| | |  |||| | |||||| |||  |||||||||  |||||||||| |||||||||  ||||||||||||||    
T  48973644 gttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtc 48973743  T
Q  229 tgttta 234  Q
     |||||    
T  48973744 cgttta 48973749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 108 - 395
Target Start/End: Original strand, 4740971 - 4741255
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4740971 tttaatgtcaaagattgctcggttatctaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtatatttctcttcccttcaatt 4741070  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatata 306  Q
    | |||  ||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    ||| || ||| |||||||| |||||||||    
T  4741071 accatgggtgatggcttagtccgtttaccattttaggcataggctaagagtttcttttctgtttttt----atgctctgttcaggcaactattgtatata 4741166  T
Q  307 ttgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  4741167 ttgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgaaaagactcttttgaggtagtattataattcattttagcttctt 4741255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 108 - 395
Target Start/End: Original strand, 13043321 - 13043608
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13043321 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13043420  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagt-taggcaacttttgtatata 306  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| |||| | ||| || |  || ||||  | ||||||| |||    
T  13043421 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctattttatcttt-tgctttgtataggagatttttgtaaata 13043519  T
Q  307 ttgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
     |||| | |||  |  |||  |||||| ||| ||||||||||| | ||  ||||||||||||||||| |||||||||||||| ||||||    
T  13043520 gtgttttggacattattgttttttccttagtgcgtcttgtgctaggaatgactcttttgaggtggtaatataattcattttaacttctt 13043608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 108 - 395
Target Start/End: Original strand, 13051398 - 13051685
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13051398 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13051497  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagt-taggcaacttttgtatata 306  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| |||| | ||| || |  || ||||  | ||||||| |||    
T  13051498 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctattttatcttt-tgctttgtataggagatttttgtaaata 13051596  T
Q  307 ttgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
     |||| | |||  |  |||  |||||| ||| ||||||||||| | ||  ||||||||||||||||| |||||||||||||| ||||||    
T  13051597 gtgttttggacattattgttttttccttagtgcgtcttgtgctaggaatgactcttttgaggtggtaatataattcattttaacttctt 13051685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 14788867 - 14788964
Alignment:
Q  136 aggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 233  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  14788867 aggtggtagataagattaagtcccttgcttttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagtcagttt 14788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 448 - 557
Target Start/End: Original strand, 4539860 - 4539970
Alignment:
Q  448 taacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattt 547  Q
    |||| ||||||||||||| ||| ||||||  |||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||| || |||    
T  4539860 taacctgtgctctcaaaggcacatgttaagaaactcattataaaaatatatgtattaaaaatcgtgcaatcaacttcttaaaagttaaattatcatgttt 4539959  T
Q  548 tt-aatgcaaa 557  Q
    || ||||||||    
T  4539960 ttcaatgcaaa 4539970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 440 - 560
Target Start/End: Complemental strand, 25134252 - 25134130
Alignment:
Q  440 gtaaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaag-ttaaaat 538  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| |||||| ||||| |||||| |||| |||||  || ||||||| ||||| |||||||    
T  25134252 gtaaatgttaacttgtgctctcaaagacacatgttaaggaactcattatagaaatatatgtatcaaaagtcgtg-cattaacttctaaaaagtttaaaat 25134154  T
Q  539 attatattttt--aatgcaaagtt 560  Q
    ||||| |||||  |||||||||||    
T  25134153 attatgtttttccaatgcaaagtt 25134130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 20017522 - 20017410
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    |||||||| || ||||||||||| ||||||| |||||||||||||| ||| |||||||| |||||||| || || |||   ||||||||| ||| ||| |    
T  20017522 caggtggtagaaaagattaagtctcttgcttatacgtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctttgtccgttca 20017423  T
Q  235 tcattttaggcat 247  Q
     |||||| |||||    
T  20017422 ccattttgggcat 20017410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 442 - 561
Target Start/End: Original strand, 39430258 - 39430378
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||| ||| ||||| | | | | |||||||||| |||||| ||| | |||||| |||| ||||| | ||||||||| |||||||||||||||    
T  39430258 aaatgctaacttatgccctcaagggcgcatcttaaagaactcattatagaaacatatgtatcaaaagtcgtgcagtcaacttctaaaaagttaaaatatt 39430357  T
Q  542 atatttt-taatgcaaagttg 561  Q
    || ||||  ||||||||||||    
T  39430358 atgttttccaatgcaaagttg 39430378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 47160990 - 47161106
Alignment:
Q  138 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 237  Q
    ||||| |||| |||||||| | |  |||||| ||||||||||  |||||||  ||||||||| |||||||| |||   ||||||||||| | ||||||      
T  47160990 gtggtggataggattaagttgttaacttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttagaccgtttattg 47161089  T
Q  238 ttttaggcattggctaa 254  Q
    |||||||||||||||||    
T  47161090 ttttaggcattggctaa 47161106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 561
Target Start/End: Complemental strand, 47850087 - 47849967
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| ||| |||||  ||||| ||||| |||||| ||||| |||||| ||||| || ||| |||| || || | || |||| |||||| ||||||||||    
T  47850087 aaatgttaatttgtgtcctcaaggacacatgttaaggaactcattatagaaatatatctatcaaaattcatgcattcgactttttaaaaattaaaatatt 47849988  T
Q  542 atattttt-aatgcaaagttg 561  Q
    |||||||| ||||||||||||    
T  47849987 atatttttcaatgcaaagttg 47849967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 442 - 560
Target Start/End: Original strand, 18029986 - 18030105
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| |||||| ||| ||||| | ||| |||||| ||||||| || | ||||| |||||  |||| ||||| | |||| ||||||||||| ||||||||    
T  18029986 aaatgttaacttatgccctcaagggcacatgttaaggaacttaataaagaaatatatgtacgaaaagtcgtgcattcaatttcttaaaagtcaaaatatt 18030085  T
Q  542 atatttt-taatgcaaagtt 560  Q
    |||||||  |||||||||||    
T  18030086 atattttccaatgcaaagtt 18030105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 25102102 - 25102037
Alignment:
Q  484 attatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattttt 549  Q
    |||||| ||||| |||||| |||||| ||||| | ||||||| |||||||||||||| ||||||||    
T  25102102 attatagaaatatatgtatcaaaaattgtgtatttaacttctcaaaagttaaaatatcatattttt 25102037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 549
Target Start/End: Complemental strand, 54787964 - 54787855
Alignment:
Q  440 gtaaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaata 539  Q
    ||||| ||||||||||||| |||| || |  |||||| ||| | |||||| ||||| |  ||| |||||||||  | ||||| ||||||||||||||||     
T  54787964 gtaaaggctaacttgtgctttcaaggatatatgttaaggaattcattataaaaatatacatatcaaaaatcgtacattcaacatcttaaaagttaaaatg 54787865  T
Q  540 ttatattttt 549  Q
    ||||||||||    
T  54787864 ttatattttt 54787855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 6894192 - 6894304
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||| ||| |||| |  ||||||||||||||||||||   |||||| |||||| |||||    
T  6894192 caggtggtcgataggattaagttactgactttcaaatggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgttta 6894291  T
Q  235 tcattttaggcat 247  Q
      |||||||||||    
T  6894292 ctattttaggcat 6894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 561
Target Start/End: Original strand, 47006594 - 47006714
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| |||||||||| ||||| | ||| |||||| |||||| ||||| |||||   | || |||| ||||| | |||||||||||||| ||||||| ||    
T  47006594 aaatgttaacttgtgccctcaagggcacatgttaaggaactttttatagaaatattcgcatcaaaagtcgtgcattcaacttcttaaaatttaaaatgtt 47006693  T
Q  542 atatttt-taatgcaaagttg 561  Q
    || ||||  ||||||||||||    
T  47006694 atgttttccaatgcaaagttg 47006714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 548
Target Start/End: Complemental strand, 48192712 - 48192624
Alignment:
Q  460 tcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt 548  Q
    |||| ||||| ||||||  ||||||||||| ||||| |  |||||||||||| | | ||||||||||||||||| | ||||||| ||||    
T  48192712 tcaaggacacatgttaagaaacttattatagaaatatacttattaaaaatcgcgcattcaacttcttaaaagttgacatattatgtttt 48192624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 561
Target Start/End: Original strand, 44418527 - 44418570
Alignment:
Q  519 aacttcttaaaagttaaaatattatattttt-aatgcaaagttg 561  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  44418527 aacttcttaaaagttaatatattatatttttcaatgcaaagttg 44418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 560
Target Start/End: Original strand, 25096289 - 25096398
Alignment:
Q  451 cttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt-t 549  Q
    ||||||| ||||||| ||| |||||| ||||| |||||| ||||| | | || ||||||| |  | |||||||||||||| ||||||| ||||||||| |    
T  25096289 cttgtgccctcaaaggcacatgttaaggaactcattatagaaatatacgcataaaaaatcatacattcaacttcttaaaa-ttaaaatgttatattttct 25096387  T
Q  550 aatgcaaagtt 560  Q
    ||| |||||||    
T  25096388 aatacaaagtt 25096398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 442 - 548
Target Start/End: Complemental strand, 47499535 - 47499429
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| ||| ||||||| | |||||||| ||||||  || | |||||| ||||| | ||||||||| | ||| | ||||||| ||||||||| | |||||    
T  47499535 aaatgttaatttgtgctattaaagacacatgttaagaaattcattataaaaatatacgtattaaaagttgtgaattcaactttttaaaagttcatatatt 47499436  T
Q  542 atatttt 548  Q
    |||||||    
T  47499435 atatttt 47499429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 25845647 - 25845740
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 228  Q
    |||||||| ||||| |||||||||||  |||| | |||||||||| ||||||||  |||||| ||||| || || |||   |||||||||||||    
T  25845647 caggtggttgataaaattaagtcgctctctttcatgtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtc 25845740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 33388634 - 33388601
Alignment:
Q  174 ttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||||| |||||||||||||||||    
T  33388634 ttgaagacgaagtttgcttctcttcccttcaatt 33388601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 548
Target Start/End: Original strand, 37919193 - 37919262
Alignment:
Q  479 aacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt 548  Q
    |||| |||||||||||| | |||| |||||| ||| | ||||||||||||||||| | ||||||| ||||    
T  37919193 aactcattatataaatatacgtatcaaaaattgtgcattcaacttcttaaaagttgacatattatgtttt 37919262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 439 - 713
Target Start/End: Original strand, 43451711 - 43451988
Alignment:
Q  439 tgtaaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaat 538  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43451711 tgtaaatgctaacttgtgctttcaaagacatgtattaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaat 43451810  T
Q  539 attatatttttaatgcaaagttgnnnnnnnnn----attccttaacatgtgcctttaggcaaagacacaaaataacatgatctaaatcaaattagcattg 634  Q
    ||||||||||||||||||||||              |||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  43451811 attatatttttaatgcaaagttttttttttttttttattccttaacatgtgcctttagacaaagacacaaaataacat-atccaaatcaaattagcattg 43451909  T
Q  635 ctaccaaaaaatttaaaagacatgttattttttagagttgagatctctccatttaaactagagctctcaactctattct 713  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  43451910 ctaccaaaaaatttaaaagacatgttatttttgagagttgagatctctccatttaaattagagctctcaactctattct 43451988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 174 - 366
Target Start/End: Original strand, 8090506 - 8090698
Alignment:
Q  174 ttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttt 273  Q
    ||||||||| ||||| |||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  8090506 ttgaagacggagtttatttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgttttt 8090605  T
Q  274 tgtttatgatcagttaggcaacttttgtatatattgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttga 366  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  8090606 tgtttatgatctgttaggcaacttttgtatatattgttcttaactctgatgtcctttcctgagtacgtcttgtgctcagaaagactcttttga 8090698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 108 - 272
Target Start/End: Complemental strand, 40638930 - 40638766
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||| ||| | ||||  ||||||||||| |||||||| |||||| | ||||||||||||| |  ||||| || |||||||||||||||||    
T  40638930 tttaatgtcaaagagtgctcagttaatcaggtggtcgacaagattaaatcgcttacctttacgtggttgatgttgaagtatgcttctcttcccttcaatt 40638831  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 272  Q
    | |||  |||||||||||||| |||||  ||||| | ||| |||||| |||||||||| ||||||    
T  40638830 accatgggtggtggcttagtccgtttacgattttggacataggctaaaagtttcttttatgtttt 40638766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 108 - 395
Target Start/End: Original strand, 20948080 - 20948363
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    ||||||| |||||| ||| |||||   ||||||||| | ||||||||||||||||| ||| ||||||||||| |||||| |  |||||||| | ||||||    
T  20948080 tttaatgccaaagactgctcggtttctcaggtggtcaacaagattaagtcgcttgccttttcgtggttgaaggcgaagtattcttctcttcgcctcaatt 20948179  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 307  Q
    | |||  |||||||||||||| ||||| ||| || ||  | |||||||  |||||||||| |||| |   | ||  || | ||   ||||||||| ||||    
T  20948180 accatgggtggtggcttagtccgtttaccatgttgggtgtaggctaaggttttcttttcttttttcttgctctgtaca-tgag---acttttgtaaatat 20948275  T
Q  308 tgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    ||||   ||| ||| |||   ||||| ||||||||||||||| | ||  ||||||||||||||||| |||||||||||||||||||||    
T  20948276 tgtttcggacactgttgtttcttccttagtacgtcttgtgctaggaaggactcttttgaggtggtaatataattcattttagcttctt 20948363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 442 - 561
Target Start/End: Complemental strand, 44068945 - 44068825
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| ||| |||||||||||||||||| |||||| ||| | |||||| ||||| |||||| |||| ||||| |||||||||||||||||||||| |||     
T  44068945 aaatgttaatttgtgctctcaaagacacatgttaaggaattcattatagaaatatatgtatcaaaagtcgtgcaatcaacttcttaaaagttaaattatc 44068846  T
Q  542 atattttt-aatgcaaagttg 561  Q
    || ||||| ||||||||||||    
T  44068845 atgtttttcaatgcaaagttg 44068825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 31640241 - 31640356
Alignment:
Q  138 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 237  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||   ||||||||||||| |||||  |    
T  31640241 gtggtagataagattaagtcacttgcttttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtttacaa 31640340  T
Q  238 ttttaggcattggcta 253  Q
    || ||||||| |||||    
T  31640341 ttataggcataggcta 31640356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 448 - 557
Target Start/End: Complemental strand, 29877172 - 29877062
Alignment:
Q  448 taacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattt 547  Q
    ||||||||||  |||||||||| |||||||||||| |||||| ||||| ||||||||||| ||||| | |||| |||| |||||||||| ||| ||||||    
T  29877172 taacttgtgccttcaaagacacatgttaaagaactcattataaaaataaatgtattaaaagtcgtgcagtcaatttctcaaaagttaaattataatattt 29877073  T
Q  548 tt-aatgcaaa 557  Q
    || ||||||||    
T  29877072 ttcaatgcaaa 29877062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 536
Target Start/End: Original strand, 25626471 - 25626565
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    |||||||||||||||| |||||   ||| ||||||||||||||||||  ||||| | |||| |||| ||||||| ||||||||||||||||||||    
T  25626471 aaatgctaacttgtgccctcaagagcacatgttaaagaacttattattgaaatatacgtatcaaaagtcgtgtagtcaacttcttaaaagttaaa 25626565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 27708286 - 27708189
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 232  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||| |||| |||| | ||||||||||||||  ||||   |||||||||| ||||||    
T  27708286 caggtggttgataagattaagtcgctcgcttttacgtggttaaaggcgaaatttgctactcttcccttcaatcttcatggttggtggcttaatctgtt 27708189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 43451281 - 43451330
Alignment:
Q  17 catcatcctacaagtgcgtaccacacgcttccactaattcaaatgcacac 66  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43451281 catcatcctacaagtgcgcaccacacgcttccactaattcaaatgcacac 43451330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 44736075 - 44735977
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 233  Q
    ||||||||||| ||||||||||| ||  |||||| |||||||||| ||||||||  | ||||||||||||||| ||||   | ||||||||||||||||    
T  44736075 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtctgttt 44735977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 540
Target Start/End: Original strand, 7061551 - 7061620
Alignment:
Q  471 tgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatat 540  Q
    ||||||||||||||||||| ||||| ||| || |||| ||||||||| ||||||| ||||||||||||||    
T  7061551 tgttaaagaacttattatagaaatatatgcatcaaaagtcgtgtaataaacttctaaaaagttaaaatat 7061620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 535
Target Start/End: Complemental strand, 25626412 - 25626319
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaa 535  Q
    |||||||||||||||| |||||  |||| |||||| |||||||||||| ||||| | |||| |||| ||||  | |||||||||||||||||||    
T  25626412 aaatgctaacttgtgccctcaataacacatgttaaggaacttattatagaaatatacgtatcaaaagtcgtacattcaacttcttaaaagttaa 25626319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 27009200 - 27009296
Alignment:
Q  138 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    ||||| |||||||||||||| || ||||||| ||| |||||| |||| |||  |||||||||||||||||| |||   ||||||||||||| |||||    
T  27009200 gtggttgataagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgttta 27009296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 448 - 548
Target Start/End: Complemental strand, 32294667 - 32294567
Alignment:
Q  448 taacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattt 547  Q
    |||||||||| ||||| | ||| |||||| ||||| |||||| ||||| ||||||||||| ||||| | ||||||||| |||||| ||| |||||| |||    
T  32294667 taacttgtgccctcaagggcacatgttaaggaactcattatagaaatatatgtattaaaagtcgtgcattcaacttctgaaaagtcaaactattatgttt 32294568  T
Q  548 t 548  Q
    |    
T  32294567 t 32294567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 442 - 561
Target Start/End: Complemental strand, 39420356 - 39420236
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||| | ||||| | ||| |||||| ||||| |||||| ||||| |  |||||||  ||||| | |||||||||| ||||||||||||||    
T  39420356 aaatgctaacttgttcgctcaagggcacatgttaaggaactcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaaatatt 39420257  T
Q  542 atatttt-taatgcaaagttg 561  Q
    || ||||  ||||||||||||    
T  39420256 atgttttccaatgcaaagttg 39420236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 442 - 549
Target Start/End: Original strand, 2889104 - 2889211
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| |||||||||| ||||| | ||| |||||| |||||||||||| |||||||  ||| |||| ||||  | |||||||||||||||| ||||| |     
T  2889104 aaatgttaacttgtgccctcaagggcacatgttaatgaacttattataaaaatacacatatcaaaattcgtacattcaacttcttaaaagtcaaaatttc 2889203  T
Q  542 atattttt 549  Q
    ||||||||    
T  2889204 atattttt 2889211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 561
Target Start/End: Complemental strand, 20061218 - 20061098
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||| |||||||||| ||||| | ||| || ||| ||||| |||||| ||||| | |||| |||| | ||| | ||||||||||||||||| | |||||    
T  20061218 aaatgttaacttgtgccctcaagggcacatgctaaggaactcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttgacatatt 20061119  T
Q  542 atattttt-aatgcaaagttg 561  Q
    || ||||| ||||||||||||    
T  20061118 atgtttttcaatgcaaagttg 20061098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 192 - 395
Target Start/End: Complemental strand, 9420795 - 9420594
Alignment:
Q  192 tctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagt-tag 290  Q
    ||||||||| |||||||||||  |||||||||||| | |||||  ||||||||||| |||||||  ||||||||   | |||||||| || || ||  ||    
T  9420795 tctcttcccctcaattatcatgggtggtggcttagcccgtttactattttaggcataggctaaggttttctttt---tgttttgttt-tgctctgtacag 9420700  T
Q  291 gcaacttttgtatatattgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattat-aattcattttag 389  Q
    |  |||||||||  |||||||   ||| ||| |||   ||||| ||||||||||||||| | ||  ||||||||||||||||| ||| |||||||||||     
T  9420699 gagacttttgtaattattgtttcggacactgttgtttcttccttagtacgtcttgtgctaggaaggactcttttgaggtggtaatataaattcattttaa 9420600  T
Q  390 cttctt 395  Q
    ||||||    
T  9420599 cttctt 9420594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 440 - 561
Target Start/End: Original strand, 39364418 - 39364540
Alignment:
Q  440 gtaaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaata 539  Q
    |||||| |||||||||   ||||| ||||| |||||| |||||||||||| |||||    ||| |||| |||| || | ||||||| |||||||||||||    
T  39364418 gtaaatactaacttgtatcctcaatgacacatgttaaggaacttattatagaaatatgcatatcaaaagtcgtatagtaaacttctaaaaagttaaaata 39364517  T
Q  540 ttatatttt-taatgcaaagttg 561  Q
    |||| ||||  ||||||||||||    
T  39364518 ttatgttttccaatgcaaagttg 39364540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 45131220 - 45131107
Alignment:
Q  141 gtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattt 240  Q
    ||||| ||||||| |||||   |||| | ||||||||||  ||| | || ||||||||||||||||||||||  ||||||||||||||  |||| |||      
T  45131220 gtcgacaagattatgtcgcaaactttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgc 45131121  T
Q  241 taggcattggctaa 254  Q
    | ||||||||||||    
T  45131120 tgggcattggctaa 45131107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 561
Target Start/End: Original strand, 4828883 - 4828946
Alignment:
Q  499 gtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt-taatgcaaagttg 561  Q
    ||||||||||||||  | ||||||||||||||||| | ||||||||||||  ||||||||||||    
T  4828883 gtattaaaaatcgtacattcaacttcttaaaagttgacatattatattttcaaatgcaaagttg 4828946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 9840768 - 9840855
Alignment:
Q  138 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 225  Q
    ||||| ||||||||||| ||||| ||||||| ||| |||||| | || |||| | ||||||| ||||||||||||   ||||||||||    
T  9840768 gtggttgataagattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggctta 9840855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 533
Target Start/End: Original strand, 37230559 - 37230650
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagtt 533  Q
    ||||||||||||||||  |||| ||||| ||| || ||| | |||||||||||| |||||| |||| || || | |||| ||||||||||||    
T  37230559 aaatgctaacttgtgccttcaaggacacatgtaaaggaaatcattatataaatatatgtatcaaaagtcatgcattcaatttcttaaaagtt 37230650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 442 - 548
Target Start/End: Original strand, 14275754 - 14275859
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||| | ||| | ||| | |||| ||||| |||||| ||||| | |||| |||| || || | ||||||||||||||||||| |||||    
T  14275754 aaatgctaacttgtgccc-caagggcacatattaaggaactcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatatt 14275852  T
Q  542 atatttt 548  Q
    || ||||    
T  14275853 atgtttt 14275859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 33645932 - 33645830
Alignment:
Q  139 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcat 238  Q
    |||| ||||||||||||||||| || |||| ||||||||||   || |||| | ||||||| |||||||| |||   |||||| |||||||||| | |||    
T  33645932 tggttgataagattaagtcgctcgcatttaggtggttgaaggaaaaatttgctactcttcctttcaattaccatggttggtgggttagtctgttcaccat 33645833  T
Q  239 ttt 241  Q
    |||    
T  33645832 ttt 33645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 472 - 557
Target Start/End: Original strand, 36284993 - 36285079
Alignment:
Q  472 gttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattttt-aatgcaaa 557  Q
    ||||| |||| ||||||| ||||| |  |||||||| | ||  | ||||||||||||||||||||||||||| ||||| ||||||||    
T  36284993 gttaaggaacatattataaaaatatacatattaaaagttgtacattcaacttcttaaaagttaaaatattatttttttcaatgcaaa 36285079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 21563423 - 21563488
Alignment:
Q  147 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 212  Q
    ||||||||||| ||| ||||||||||||||| | | || |||||||||||| | || |||||||||    
T  21563423 aagattaagtcactttcttttacgtggttgagggcaaaatttgtttctctttcattaaattatcat 21563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 30505717 - 30505838
Alignment:
Q  138 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 237  Q
    ||||| |||||||||||||  || || ||||  | |||||||  ||| |||  ||| ||||||||||||||||||   |||||| |||||||||||| ||    
T  30505717 gtggttgataagattaagtttctcgcatttatctagttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttacca 30505816  T
Q  238 ttttaggcattggctaagagtt 259  Q
    | || ||||| |||||| ||||    
T  30505817 tgttgggcataggctaatagtt 30505838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 170 - 395
Target Start/End: Original strand, 16610602 - 16610827
Alignment:
Q  170 gtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  16610602 gtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaatagtttcttttctgt 16610701  T
Q  270 tttttgtttatgatcagttaggcaacttttgtatatattgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggt 369  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  16610702 tttttgtttatgatctgttaggcaacttttgtatatattgttcttgactctgatgtcctttcctgagtatgtcttgtgctcggaaagactcttttgaggt 16610801  T
Q  370 ggtattataattcattttagcttctt 395  Q
    ||||||||||||||||||||||||||    
T  16610802 ggtattataattcattttagcttctt 16610827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 108 - 395
Target Start/End: Complemental strand, 31706552 - 31706269
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| | ||||||||||| ||||||    
T  31706552 tttaatgtcaaagattgtttggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaatt 31706453  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatata 306  Q
    | |||  |||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||     |||||| |  ||| |||||||| ||||| |||    
T  31706452 accatgggtggtggcttagtccgtttaccatattgggcataggctaagagtttcttttctgtt-----tttatgctttgttcaggcaactattgtaaata 31706358  T
Q  307 ttgttcttgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||| |||||||||||||| ||||||    
T  31706357 ttgttcttgactctgatgtcctttcctgagcacgtcttgtgctaagaaaaactcttttgaggtggtaatataattcattttaacttctt 31706269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 140 - 395
Target Start/End: Complemental strand, 29651894 - 29651644
Alignment:
Q  140 ggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcatt 239  Q
    |||||| |||||||||| |||||||||| ||||||||||  ||||||   ||||||||| | |||||||||||  |||||||||||||| ||||| |||     
T  29651894 ggtcgacaagattaagttgcttgctttttcgtggttgaatgcgaagtacttttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatg 29651795  T
Q  240 ttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatattgttcttgactctgatgtcctttcctgagtac 339  Q
    || ||||| |||||||  |||||||||| ||| |||  | ||  |    |||  ||||||||| ||||||||   ||| ||| |||   ||||| ||| |    
T  29651794 ttgggcataggctaaggttttcttttctttttcttg-ctctgtac----aggagacttttgtaaatattgtttcggacactgttgtttcttccttagttc 29651700  T
Q  340 gtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||||||| | ||  |||||||| |||||||| |||||||||||||||||||||    
T  29651699 gtcttgtgctaggaaggactctttttaggtggtaatataattcattttagcttctt 29651644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 30722432 - 30722365
Alignment:
Q  328 tttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||| ||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||    
T  30722432 tttccttagtacgtcttgtgctaggaaagactcttttgaggtggtaatataattcattttagcttctt 30722365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 704642 - 704490
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    ||||| || ||||||||  ||||||| | |||| | |||||||||||||  ||| ||||| | ||||||||| | ||||||| || |||||| |||||||    
T  704642 tttaacgttaaagattgttcggttattcgggtgatagataagattaagtttcttacttttgcttggttgaaggcaaagtttgcttttcttccattcaatt 704543  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 260  Q
    |||||  |||||| ||||||| ||||| |||  | |||||||||||| |||||    
T  704542 atcatgggtggtgacttagtccgtttaccatactgggcattggctaaaagttt 704490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 30722638 - 30722538
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||||||||| ||| ||||||  |||||||| || || |||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  30722638 tttaatgtcaaagaatgctcggttaatcaggtggtagacaatattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 30722539  T
Q  208 a 208  Q
    |    
T  30722538 a 30722538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 27482798 - 27482646
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    |||||||  ||||| ||| |||| || |||||||| |||||||||||||| || || |||  ||||||||||  ||| |  ||| | |||||||||||||    
T  27482798 tttaatgataaagaatgctcggtaattcaggtggttgataagattaagtccctcgccttttggtggttgaaggtgaaatacgttacacttcccttcaatt 27482699  T
Q  208 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 260  Q
    |||||   ||||||||||||| ||| | ||| || ||||| ||||||||||||    
T  27482698 atcatggctggtggcttagtccgttcaccatgttgggcataggctaagagttt 27482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 442 - 548
Target Start/End: Original strand, 26105007 - 26105113
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||| ||||| ||||| |||||| |||||||||| | ||||| | | || |||| ||||| | |||| |||||||||||| | |||||    
T  26105007 aaatgctaacttgtgcactcaatgacacatgttaaggaacttattaaagaaatatacgcataaaaagtcgtgcattcaaattcttaaaagttgatatatt 26105106  T
Q  542 atatttt 548  Q
    || ||||    
T  26105107 atgtttt 26105113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 561
Target Start/End: Complemental strand, 24519564 - 24519443
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgt-gttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatat 540  Q
    |||||||||||||||||||||| | ||| | |||||| || ||||||||  ||||  ||||| | || ||||| | ||||||||||||||||| | || |    
T  24519564 aaatgctaacttgtgctctcaagggcacattgttaaaaaatttattataggaatatttgtatcacaagtcgtgcattcaacttcttaaaagttgacatgt 24519465  T
Q  541 tatattttt-aatgcaaagttg 561  Q
    ||||||||| ||||||||||||    
T  24519464 tatatttttcaatgcaaagttg 24519443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 440 - 531
Target Start/End: Complemental strand, 8222188 - 8222097
Alignment:
Q  440 gtaaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaag 531  Q
    ||||||| ||||||||||||| || ||||| |||||| ||||| |||||| ||||| | |||||||||| |||| |  ||| ||||||||||    
T  8222188 gtaaatgttaacttgtgctcttaatgacacatgttaatgaactcattatagaaatatacgtattaaaaaccgtgcatccaatttcttaaaag 8222097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 557
Target Start/End: Complemental strand, 16627380 - 16627306
Alignment:
Q  484 attatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt-taatgcaaa 557  Q
    |||||| ||||| ||||||||||| ||||| | ||||||| ||||||||||||||| ||| |||| |||||||||    
T  16627380 attataaaaatatatgtattaaaagtcgtgcattcaactttttaaaagttaaaatactatgttttctaatgcaaa 16627306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 29994645 - 29994735
Alignment:
Q  163 cttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggcta 253  Q
    |||||| ||||||||||  |||||||  || |||||||||||||||||||   |||||||||| || |||||   ||||||||||||||||    
T  29994645 cttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttactgttttaggcattggcta 29994735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 548
Target Start/End: Complemental strand, 554422 - 554345
Alignment:
Q  471 tgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt 548  Q
    |||||| ||||| |||||| ||||| |||||||||||  |||| | ||||||| |||||||||||| ||| |||||||    
T  554422 tgttaaggaactcattatagaaatatatgtattaaaagccgtgcagtcaactttttaaaagttaaattatcatatttt 554345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 22922550 - 22922506
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaag 179  Q
    |||||||| || ||||||||||| |||||||||||||||||||||    
T  22922550 caggtggtagagaagattaagtctcttgcttttacgtggttgaag 22922506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 43340294 - 43340397
Alignment:
Q  459 ctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt-taatgcaaa 557  Q
    ||||||||||| |||||| |||||||||| | ||||| | | || |||| | ||  | ||||||||||||||||||| ||||||| ||||  ||||||||    
T  43340294 ctcaaagacacatgttaaggaacttattaaagaaatataagcataaaaagttgtacattcaacttcttaaaagttaatatattatgttttccaatgcaaa 43340393  T
Q  558 gttg 561  Q
    ||||    
T  43340394 gttg 43340397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 441 - 543
Target Start/End: Original strand, 10523652 - 10523754
Alignment:
Q  441 taaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatat 540  Q
    ||||||||||| ||||||||  |   ||| |||||| ||||| |||||| ||||| | |||| |||| ||||| | |||| ||||||||||||||| |||    
T  10523652 taaatgctaacgtgtgctcttgagagcacatgttaaggaactcattatagaaatatacgtatcaaaagtcgtgcattcaatttcttaaaagttaaactat 10523751  T
Q  541 tat 543  Q
    |||    
T  10523752 tat 10523754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 18967864 - 18967970
Alignment:
Q  147 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggca 246  Q
    ||||||||||| ||| |||||| |||||||||| |||| |||| ||||||||| || ||| |||||   || ||||||||||  ||||| ||  | ||||    
T  18967864 aagattaagtcactttcttttatgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccatttattatgctgggca 18967963  T
Q  247 ttggcta 253  Q
    |||||||    
T  18967964 ttggcta 18967970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 22924208 - 22924159
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaa 184  Q
    |||||||| || ||||||||||| |||| |||||||||||||||| ||||    
T  22924208 caggtggtagagaagattaagtctcttggttttacgtggttgaaggcgaa 22924159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 536
Target Start/End: Original strand, 29557499 - 29557564
Alignment:
Q  471 tgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    |||||||||| |||||||| ||||| |||||| |||| ||||||| | || || ||||||||||||    
T  29557499 tgttaaagaatttattatagaaatatatgtatcaaaagtcgtgtagttaaatttttaaaagttaaa 29557564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 251 - 395
Target Start/End: Complemental strand, 20009 - 19869
Alignment:
Q  251 ctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatatattgttcttgactctgatgtcctttcctgagtacgtcttgtgct 349  Q
    |||||||||||||||||||||||     ||| || ||| |||||||| ||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  20009 ctaagagtttcttttctgttttt-----atgctctgttcaggcaactattgtaaatattgttcttgactctgatgtcctttcctggatacgtcttgtgct 19915  T
Q  350 cgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
     | ||| ||||||||||| ||||| |||||||||||||| ||||||    
T  19914 aggaaacactcttttgagatggtaatataattcattttaacttctt 19869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 117 - 253
Target Start/End: Original strand, 52577965 - 52578101
Alignment:
Q  117 aaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagt 216  Q
    |||| |||| ||||| | |||||| | |||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||||   |    
T  52577965 aaagtttgctcggttcttcaggtgatagataagattaagtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggtt 52578064  T
Q  217 ggtggcttagtctgtttatcattttaggcattggcta 253  Q
    |||||||||||  ||||  |||| ||||||| |||||    
T  52578065 ggtggcttagtgcgtttgccattctaggcataggcta 52578101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 442 - 557
Target Start/End: Complemental strand, 27918499 - 27918383
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||| ||||| ||||| |||||| |||||  ||||| ||||| |||||| |||| ||||| | | |||||||||||||||||||||||    
T  27918499 aaatgctaacttgtgccctcaaggacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaatatt 27918400  T
Q  542 atattttt-aatgcaaa 557  Q
    |||||||| ||||||||    
T  27918399 atatttttcaatgcaaa 27918383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 442 - 548
Target Start/End: Complemental strand, 42051275 - 42051169
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    ||||||||||||||||  |||| ||||| | |||| ||||| |||||| ||||| |||||| |||| ||||| | ||||||| |||||||||||||||||    
T  42051275 aaatgctaacttgtgccatcaaggacacatattaatgaactcattataaaaatatatgtatcaaaagtcgtgcattcaacttgttaaaagttaaaatatt 42051176  T
Q  542 atatttt 548  Q
    |||||||    
T  42051175 atatttt 42051169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 9831377 - 9831476
Alignment:
Q  129 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 228  Q
    ||||| |||||||| |||||||| ||||| |||||||||| |||||||||| |||| || ||| | ||||||||||||||||||   |||||||||||||    
T  9831377 gttattcaggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtc 9831476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 467 - 557
Target Start/End: Original strand, 38705768 - 38705859
Alignment:
Q  467 cacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattttt-aatgcaaa 557  Q
    ||||| |||| |||||||||||| ||||| ||| || ||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||    
T  38705768 cacgtattaaggaacttattatagaaatatatgcatcaaaaatcgtgtaatcgacttttaaaaagttaaaatattatatttttcaatgcaaa 38705859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 548
Target Start/End: Original strand, 22019387 - 22019493
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||| ||||| ||||| |||||||||||| |||||| ||||| ||| ||||||||||||  | ||||||||| |||| | ||| |||     
T  22019387 aaatgctaacttgtgccctcaaggacacatgttaaagaactcattatagaaatatatgcattaaaaatcgtacattcaacttctaaaaaatgaaactatc 22019486  T
Q  542 atatttt 548  Q
    |||||||    
T  22019487 atatttt 22019493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 440 - 548
Target Start/End: Original strand, 14138971 - 14139079
Alignment:
Q  440 gtaaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaata 539  Q
    ||||||| ||||||||||  |||| | ||| |||||| ||||   ||||| ||||| | |||| |||||||||||| |||| ||||||||||||||||||    
T  14138971 gtaaatgttaacttgtgccttcaagggcacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaaata 14139070  T
Q  540 ttatatttt 548  Q
    |||||||||    
T  14139071 ttatatttt 14139079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 395
Target Start/End: Original strand, 1002923 - 1002990
Alignment:
Q  328 tttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||| ||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||| |||||    
T  1002923 tttccttagtacgtcttgtgctaggaaagactcttttgaggtggtaatataattcattttagtttctt 1002990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 536
Target Start/End: Complemental strand, 29818621 - 29818525
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttatta-tataaa-tacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    ||||||| |||||| ||||||||| ||||||||||  ||||||||| |||||| || |||||| ||||||  |  ||||||||||||||||||||||    
T  29818621 aaatgctcacttgttctctcaaaggcacgtgttaagaaacttattagtataaaatatatgtatcaaaaattatccaatcaacttcttaaaagttaaa 29818525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 30972515 - 30972395
Alignment:
Q  108 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 207  Q
    ||||||| |||||| ||| |  |||| |||||||| ||||| |||||||||||  |||| | |||| ||||| |||| |||  ||||||||||||||| |    
T  30972515 tttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtcgctgactttcatgtggctgaaggcgaaatttccttctcttcccttcaact 30972416  T
Q  208 atcatcagtggtggcttagtc 228  Q
    |||||   |||||||||||||    
T  30972415 atcatggctggtggcttagtc 30972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 22653286 - 22653385
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    |||||||| ||||||||||| |||||  | |||| |||||||||| |||| |||| ||   || ||||||||||||||   |||||||||||||||||||    
T  22653286 caggtggttgataagattaaatcgctcacatttatgtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtctgttta 22653385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 471 - 557
Target Start/End: Complemental strand, 54719756 - 54719669
Alignment:
Q  471 tgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattttt-aatgcaaa 557  Q
    |||||| ||| |||||||| ||||| |  |||||||| |||| || |||||||||||||||||||| ||| |||||||| ||||||||    
T  54719756 tgttaaggaatttattatagaaatatacttattaaaagtcgtatagtcaacttcttaaaagttaaattatcatatttttcaatgcaaa 54719669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 443 - 536
Target Start/End: Complemental strand, 36937578 - 36937484
Alignment:
Q  443 aatgctaacttgtgctctcaaa-gacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    ||||||||  ||||| |||||| ||||| ||||||  |||| |||||| ||||| |||||| ||||| |||| | ||||||||||||||||||||    
T  36937578 aatgctaatctgtgccctcaaatgacacatgttaacaaactcattatagaaatatatgtataaaaaaacgtgcattcaacttcttaaaagttaaa 36937484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 11131287 - 11131194
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 228  Q
    |||||||| |||| |||||||| |||  |||||  ||||||||||  |||||||||  |||||||||| |||||||||   |||||||||||||    
T  11131287 caggtggtagataggattaagttgctatcttttcagtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 11131194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 19846574 - 19846646
Alignment:
Q  182 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaa 254  Q
    ||||| || ||||||||||||||||||||||  ||||||| |||||| ||||| ||| || ||||||| ||||    
T  19846574 gaagtatgcttctcttcccttcaattatcatgggtggtggattagtccgtttaccatgttgggcattgtctaa 19846646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 43001717 - 43001801
Alignment:
Q  144 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 228  Q
    |||||||||||||| ||  | |||| |||||||||| ||||||||  | ||||||  ||||||||||||  ||||||||||||||    
T  43001717 gataagattaagtcactaacatttatgtggttgaaggcgaagtttactactcttcatttcaattatcatatgtggtggcttagtc 43001801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 1961608 - 1961703
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaa 537  Q
    ||||| ||| |||||| ||||| | ||| ||||||| ||||||||||| ||||| |  ||| |||| ||||| | ||||||||| |||||||||||    
T  1961608 aaatgttaatttgtgccctcaagggcacatgttaaaaaacttattatagaaatataaatatcaaaagtcgtgcattcaacttctaaaaagttaaaa 1961703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 534
Target Start/End: Complemental strand, 41460013 - 41459958
Alignment:
Q  479 aacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagtta 534  Q
    ||||||||||| ||||| | ||||||||||||||||| |  |||||||||||||||    
T  41460013 aacttattatagaaatatacgtattaaaaatcgtgtatttgacttcttaaaagtta 41459958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 8831039 - 8830949
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 225  Q
    |||||||| || || |||||||||||  |||||| || |||||||  ||| ||| ||| ||||||||||||||| ||| | ||||||||||    
T  8831039 caggtggttgacaaaattaagtcgctcacttttatgtagttgaaggagaaatttctttatcttcccttcaattaccatgactggtggctta 8830949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 25130538 - 25130441
Alignment:
Q  138 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttat 235  Q
    |||||||||||||| ||||| || ||||| | ||||||||||  ||| |||| | ||||| || |||| ||||||   ||||||||||||| ||||||    
T  25130538 gtggtcgataagatcaagtccctcgctttcatgtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgtttat 25130441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 561
Target Start/End: Original strand, 36989831 - 36989952
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagtt-aaaatat 540  Q
    ||||| |||||||||  ||||| | ||| | ||||  |||| |||||| ||||| |  |||||||| ||||| | ||||||||||||||||| |||||||    
T  36989831 aaatgttaacttgtgtcctcaagggcacatattaagaaactcattataaaaatatacatattaaaagtcgtgcattcaacttcttaaaagttcaaaatat 36989930  T
Q  541 tatatttt-taatgcaaagttg 561  Q
    ||| ||||  ||||||||||||    
T  36989931 tatgttttccaatgcaaagttg 36989952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 30773070 - 30773151
Alignment:
Q  314 tgactctgatgtcctttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||||||| ||||||||| |||||||||| || ||| ||| |||||||||||||||||||||||||||||||| ||||||    
T  30773070 tgactctgatatcctttcctaagtacgtcttatgttcggaaagactcttttgaggtggtattataattcattttaacttctt 30773151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 328 - 395
Target Start/End: Original strand, 5752172 - 5752239
Alignment:
Q  328 tttcctgagtacgtcttgtgctcgtaaaaactcttttgaggtggtattataattcattttagcttctt 395  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||    
T  5752172 tttccttagtacgtcttgtgctaggaaaaactcttttgaggtggtaatataattcattttagcttctt 5752239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 135 - 234
Target Start/End: Complemental strand, 8462613 - 8462514
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    |||||||| |||||||||||||| ||  | || | |||||||||| |||| |||| ||||||||||||||||||||||   |||||||||||||||||||    
T  8462613 caggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgttta 8462514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 442 - 560
Target Start/End: Complemental strand, 40505417 - 40505298
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||  |||||||  || |||||| ||||| |||||  ||||| || ||| |||| ||||| | ||||||||||||||||||||||||     
T  40505417 aaatgctaacttgtgtcctcaaaggtacatgttaaggaactcattatgaaaatatatatatcaaaagtcgtgcattcaacttcttaaaagttaaaatatc 40505318  T
Q  542 ata-tttttaatgcaaagtt 560  Q
    ||| ||||||||||||||||    
T  40505317 atattttttaatgcaaagtt 40505298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 440 - 561
Target Start/End: Original strand, 41602401 - 41602523
Alignment:
Q  440 gtaaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaata 539  Q
    |||||||||||||||||||||||| | ||| |||||| ||| | |||||| ||||| | | || |||||||||||| |||  ||||||||| ||||| |     
T  41602401 gtaaatgctaacttgtgctctcaacggcacatgttaaggaattcattatagaaatatacgcataaaaaatcgtgtattcatattcttaaaatttaaattg 41602500  T
Q  540 ttatattttt-aatgcaaagttg 561  Q
    |||||||||| ||||||||||||    
T  41602501 ttatatttttcaatgcaaagttg 41602523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 442 - 561
Target Start/End: Original strand, 6530304 - 6530424
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||| ||||| | ||| |||||| |||||||||| | ||||| | | || |||| ||||| | |||||||||||||||| || |||||    
T  6530304 aaatgctaacttgtgccctcaagggcacatgttaaggaacttattaaagaaatataagcataaaaagtcgtgcattcaacttcttaaaagtcaatatatt 6530403  T
Q  542 atatttt-taatgcaaagttg 561  Q
    || ||||  ||||||||||||    
T  6530404 atgttttccaatgcaaagttg 6530424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 548
Target Start/End: Original strand, 35865159 - 35865236
Alignment:
Q  471 tgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt 548  Q
    |||||| |||||||||||| ||||| |  ||| |||| ||| ||| ||||||| ||||||||||||||||||||||||    
T  35865159 tgttaaggaacttattatagaaatatacatatcaaaagtcgcgtagtcaactttttaaaagttaaaatattatatttt 35865236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 557
Target Start/End: Original strand, 42685747 - 42685823
Alignment:
Q  482 ttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattttt-aatgcaaa 557  Q
    |||||||| |||||  ||||| |||| ||||||| ||||||||| ||||||||||||||||| ||||| ||||||||    
T  42685747 ttattatagaaatatgtgtatcaaaagtcgtgtagtcaacttctaaaaagttaaaatattatgtttttcaatgcaaa 42685823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 5751992 - 5752057
Alignment:
Q  147 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 212  Q
    ||||||||||||||||  ||||||||||||||| |||||| |   ||||||||| |||||||||||    
T  5751992 aagattaagtcgcttgtctttacgtggttgaaggcgaagtattcctctcttcccctcaattatcat 5752057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 561
Target Start/End: Original strand, 31313305 - 31313425
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||| ||||| | ||| |||||| ||| | |||||| ||||| | |||| |||| || || | ||||||| ||||||||| | |||||    
T  31313305 aaatgctaacttgtgccctcaagggcacatgttaaggaagtcattatagaaatatacgtatcaaaagtcatgcattcaactttttaaaagttgacatatt 31313404  T
Q  542 atatttt-taatgcaaagttg 561  Q
    || ||||  ||||||||||||    
T  31313405 atgttttccaatgcaaagttg 31313425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 549
Target Start/End: Original strand, 12703477 - 12703559
Alignment:
Q  467 cacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatattttt 549  Q
    ||||||||||  ||||||||||| ||||| | |||| |||||||||  | |||| |||| |||| |||||||||||| |||||    
T  12703477 cacgtgttaataaacttattatagaaatatacgtataaaaaatcgtacattcaatttctcaaaaattaaaatattatgttttt 12703559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 33282823 - 33282913
Alignment:
Q  144 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 234  Q
    ||||| |||||||||||| |||||| ||||||||||   || |||| |||||| ||  |||||||||||   ||||||||||||| |||||    
T  33282823 gataaaattaagtcgcttacttttaggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtccgttta 33282913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 39435582 - 39435484
Alignment:
Q  106 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 204  Q
    |||| |||| |||||| ||| ||||| | |||||||| |||||||||||||| || |  || | |||||||||| |||| |||| ||||||||| ||||    
T  39435582 tattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgagttcatgtggttgaaggcgaaatttgcttctcttcctttca 39435484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 442 - 548
Target Start/End: Complemental strand, 39699729 - 39699623
Alignment:
Q  442 aaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatatt 541  Q
    |||||||||||||||   |||| ||||| |||||| ||  |||||||| ||||| | |||| |||| ||||| | | ||||| |||||||||||| ||||    
T  39699729 aaatgctaacttgtgtcttcaaggacacatgttaaggagtttattataaaaatatacgtatcaaaagtcgtgcatttaactttttaaaagttaaagtatt 39699630  T
Q  542 atatttt 548  Q
    || ||||    
T  39699629 atgtttt 39699623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 561
Target Start/End: Complemental strand, 8769166 - 8769041
Alignment:
Q  437 attgtaaatgctaacttgtgctctcaaagacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaa-gttaa 535  Q
    |||||||||||||||| |||  ||||| | ||| | |||| ||||| |||||| ||||| |||||| |||| | ||| | |||  ||||||||| |||||    
T  8769166 attgtaaatgctaactggtggcctcaagggcacatcttaaggaactcattatagaaatatatgtataaaaagttgtgcattcatattcttaaaaggttaa 8769067  T
Q  536 aatattatatttttaatgcaaagttg 561  Q
    ||||| ||||||| |||  |||||||    
T  8769066 aatatcatattttcaatataaagttg 8769041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 536
Target Start/End: Original strand, 21372470 - 21372535
Alignment:
Q  471 tgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 536  Q
    |||||| |||||||||||| ||||| | | || |||| ||||||| ||||||| ||||||||||||    
T  21372470 tgttaaggaacttattatagaaatatacgcataaaaagtcgtgtattcaactttttaaaagttaaa 21372535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 37929106 - 37929199
Alignment:
Q  135 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 228  Q
    ||||||||||||| ||||||||| || || |||| ||||||||||  ||| |||  | |||||||||| || ||||||   |||||||||||||    
T  37929106 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 37929199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 548
Target Start/End: Complemental strand, 3102 - 3019
Alignment:
Q  465 gacacgtgttaaagaacttattatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaaatattatatttt 548  Q
    ||||| |||||| ||||| |||||| | ||| |||||| |||| || || | |||||||||||||||||||||| |||| ||||    
T  3102 gacacatgttaaggaactcattatagatatatatgtatcaaaagtcatgcattcaacttcttaaaagttaaaatgttatgtttt 3019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University