View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_43 (Length: 290)
Name: NF3943_high_43
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 6738482 - 6738364
Alignment:
| Q |
136 |
acaacaaagtaaccaacctcttcttcacacacaatcataccacaacgcatttcaccttctcacccttttcctctctcaaacaaatcatcaaacacacact |
235 |
Q |
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| T |
6738482 |
acaacaaagtaaccgacctcttcttcacacacaatcataccacaacgcatttcaccttctcacccttttcctctctcaaacaaatcatcaaacacacact |
6738383 |
T |
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| Q |
236 |
actcatacctcaattcccc |
254 |
Q |
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||||||||||||||||||| |
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| T |
6738382 |
actcatacctcaattcccc |
6738364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6738613 - 6738539
Alignment:
| Q |
1 |
tacttaccactttgagatcctatgtgctctcctccaccatcttgaaacaaccaaccatccatcatgtacctacctttac |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6738613 |
tacttaccactttgagatcctatgtgctctcctccaccatcttgaaacaaccaac----catcatgtacctacctttac |
6738539 |
T |
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