View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3943_high_47 (Length: 276)
Name: NF3943_high_47
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 27428064 - 27427815
Alignment:
| Q |
10 |
gagattttaccatcaaatttgtcatctctaacatttagctccaagagaggaatttggacttttttaatatatttttcaagtaaaccttacgttatatcaa |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428064 |
gagattttaccatcaaatttgtgatctctaacatttagctccaagagaggaatttggacttttttaatatatttttcaagtaaaccttacgttatatcaa |
27427965 |
T |
|
| Q |
110 |
tattaaatagattgttatgttagtatacattgata----atcaatttaattagaagataatgcaatttgatgatttattatggatatcaacttactttat |
205 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27427964 |
tattaaatagaatgttatgttagtatacattgataatatatcaatttaattagaagataatgcaatttgatgattttttatggatatcaacttactttat |
27427865 |
T |
|
| Q |
206 |
attactgaaaaataataaaaagaacgacataatatctaagaccctgatctaaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27427864 |
attactgaaaaataataaaaagaacgac---atatctaagaccctgatctaaa |
27427815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University